Scaffold JGI24652J20063_1018516

Overview

Basic Information

• Taxon OID: 3300001732
• Scaffold ID: JGI24652J20063_1018516
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-97
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 763
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 9.2013
  • Long. (^o): -163.4956

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000563	Metagenome	1022	Y
F055194	Metagenome	139	Y
F077783	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24652J20063_10185161	F077783	N/A	FLGENLCMKPVQSDTLYDSWYECSRAAHQESIKIISKLGYKHVNDGKLGTRYVCKINDTV
JGI24652J20063_10185162	F055194	N/A	LIKLLNGAAKNTIPQMIKEIIIIALLINGELSLVSFPFEGDMHECFAYGNELREELSTHRWVEEDIMKSGWYLNEGIGTFQGFICKQ*
JGI24652J20063_10185164	F000563	N/A	LKMRYKFKVSEEGKGDEEKEAMSYKKVLKSLITSNPKWNGIIEYINKKGREVVHTIRNGRRI*