Scaffold JGI24651J20071_1006711

Overview

Basic Information

• Taxon OID: 3300001729
• Scaffold ID: JGI24651J20071_1006711
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-91
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1334
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -5.7497
  • Long. (^o): -170.7411

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010945	Metagenome / Metatranscriptome	297	Y
F082793	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24651J20071_10067111	F082793	GAGG	MAEVIPSKDEIIHAESIAIAGDAAETLVTAGATIPQNAGDIIVVCPSGDSLHWAPSVTPTSSLGRPITLGHPGRIPHTFNKTAKLISDDGSDATC
JGI24651J20071_10067112	F010945	AGGAG	VVTRTDCPCGKADLSSAQMTMHRRSKAHKDWAAENGEIEDVAPAGDSDFEGILEAARQGEDVRHIAKMARSIFRARGWPNDEHPETVRDWLNLHNIPIIDVPIHSDPDEQRKYVAAETERIRLAGWGKGWAIT*