3300001729: Marine viral communities from the Deep Pacific Ocean - MSP-91

Overview

Basic Information

• IMG/M Taxon OID: 3300001729
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0056683 | Ga0006043
• Sample Name: Marine viral communities from the Deep Pacific Ocean - MSP-91
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 60505619
• Sequencing Scaffolds: 43
• Novel Protein Genes: 51
• Associated Families: 45

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	6
Not Available	26
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1
All Organisms → Viruses → environmental samples → uncultured marine virus	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → Viruses → environmental samples → uncultured virus	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	1
All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): -5.7497
  • Long. (^o): -170.7411
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001487	Metagenome	686	Y
F001536	Metagenome	675	Y
F001594	Metagenome / Metatranscriptome	666	Y
F002232	Metagenome / Metatranscriptome	580	Y
F002612	Metagenome / Metatranscriptome	543	Y
F003410	Metagenome / Metatranscriptome	488	Y
F003761	Metagenome / Metatranscriptome	470	Y
F004114	Metagenome / Metatranscriptome	452	Y
F004818	Metagenome	422	Y
F005071	Metagenome	413	Y
F005094	Metagenome	412	Y
F006550	Metagenome / Metatranscriptome	370	N
F008755	Metagenome / Metatranscriptome	328	Y
F010945	Metagenome / Metatranscriptome	297	Y
F011409	Metagenome	291	Y
F011673	Metagenome	288	Y
F013236	Metagenome / Metatranscriptome	273	Y
F013312	Metagenome	272	Y
F014746	Metagenome / Metatranscriptome	260	Y
F015152	Metagenome	257	Y
F022674	Metagenome	213	Y
F029903	Metagenome	187	N
F032040	Metagenome	181	N
F032241	Metagenome	180	N
F036429	Metagenome / Metatranscriptome	170	N
F037257	Metagenome / Metatranscriptome	168	Y
F039090	Metagenome	164	Y
F040680	Metagenome / Metatranscriptome	161	N
F042382	Metagenome / Metatranscriptome	158	N
F045157	Metagenome / Metatranscriptome	153	Y
F046426	Metagenome / Metatranscriptome	151	Y
F048920	Metagenome	147	N
F051979	Metagenome / Metatranscriptome	143	N
F052891	Metagenome	142	Y
F054156	Metagenome / Metatranscriptome	140	N
F056907	Metagenome	137	N
F060053	Metagenome / Metatranscriptome	133	N
F074980	Metagenome / Metatranscriptome	119	N
F078927	Metagenome / Metatranscriptome	116	Y
F080139	Metagenome / Metatranscriptome	115	Y
F081451	Metagenome	114	N
F082793	Metagenome	113	N
F090505	Metagenome / Metatranscriptome	108	N
F094395	Metagenome / Metatranscriptome	106	Y
F105497	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI24651J20071_1002677	All Organisms → Viruses → Predicted Viral	2706
JGI24651J20071_1002864	Not Available	2593
JGI24651J20071_1003517	All Organisms → Viruses → Predicted Viral	2246
JGI24651J20071_1004453	All Organisms → Viruses → Predicted Viral	1908
JGI24651J20071_1005135	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1693
JGI24651J20071_1006711	All Organisms → Viruses → Predicted Viral	1334
JGI24651J20071_1007442	Not Available	1216
JGI24651J20071_1007464	All Organisms → Viruses → Predicted Viral	1213
JGI24651J20071_1008152	All Organisms → Viruses → Predicted Viral	1118
JGI24651J20071_1008230	Not Available	1108
JGI24651J20071_1008872	All Organisms → Viruses → environmental samples → uncultured marine virus	1037
JGI24651J20071_1008958	Not Available	1026
JGI24651J20071_1009183	Not Available	1005
JGI24651J20071_1009263	Not Available	997
JGI24651J20071_1010083	All Organisms → cellular organisms → Bacteria	924
JGI24651J20071_1010153	Not Available	917
JGI24651J20071_1010250	Not Available	910
JGI24651J20071_1011221	Not Available	836
JGI24651J20071_1011532	All Organisms → Viruses → environmental samples → uncultured virus	816
JGI24651J20071_1011551	All Organisms → cellular organisms → Bacteria	814
JGI24651J20071_1011665	Not Available	807
JGI24651J20071_1011696	Not Available	805
JGI24651J20071_1011726	Not Available	803
JGI24651J20071_1011944	All Organisms → cellular organisms → Bacteria	790
JGI24651J20071_1011991	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	788
JGI24651J20071_1012433	Not Available	764
JGI24651J20071_1012592	Not Available	755
JGI24651J20071_1012670	All Organisms → Viruses → environmental samples → uncultured virus	752
JGI24651J20071_1013835	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium	701
JGI24651J20071_1014094	Not Available	690
JGI24651J20071_1015705	Not Available	635
JGI24651J20071_1015953	Not Available	628
JGI24651J20071_1016132	Not Available	623
JGI24651J20071_1017205	Not Available	596
JGI24651J20071_1017407	Not Available	591
JGI24651J20071_1018168	Not Available	572
JGI24651J20071_1019190	Not Available	551
JGI24651J20071_1019828	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	540
JGI24651J20071_1020096	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	536
JGI24651J20071_1020109	Not Available	536
JGI24651J20071_1020112	Not Available	536
JGI24651J20071_1021597	Not Available	512
JGI24651J20071_1022403	Not Available	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI24651J20071_1002677	JGI24651J20071_10026772	F039090	MPDSLVNTATGEVVTGDEYVDMMLRNYEEANEAFQQAREDRERARMVMFQYMDSEGSNGIPSETYNVRRKQTYDYTKNKDGFLPLMEILNGPDLVKVYTPPTPADGKWNAQQIKALVETYPQIGEVLEQVREAKVTLEFNRRVAGRAVFFNGE*
JGI24651J20071_1002864	JGI24651J20071_10028649	F003410	MKIIMILATGALITFTPDHRTNPDCFSKGYEIMKNIATYQGPEEKGKDQGWILNDSNIEVAGWYCQ*
JGI24651J20071_1002876	JGI24651J20071_10028761	F040680	MYTDVKQTIAITSTGQLQKYVGTSATNITKARIMAISAQCSGADGSVKIYNTVGAATAAKLVAELKFGAAANEWTHFYVPGQGIYCDTGMYAVLSSCDYLTVTGTFT*
JGI24651J20071_1003517	JGI24651J20071_10035174	F010945	VVTRTDCPCGKTGLSSAQMTMHNRSKAHKEWAGDDGEVVQDVDRDFEGILAAARQGEDVRHIAKMARSIFRARGWPNDEHPETVRDWLNLHNIPIIDVPIHSDPDEQRKHISAETERIRLAGWGKGWNIT*
JGI24651J20071_1004144	JGI24651J20071_10041441	F036429	MATVKSVEITNLDATPRTTLEAASAGGKLRVWMDTIAVGTGDLDDDDXIILGQVPSNAKIVSLRIYNDDLNSGSGTHNLGLYNGPQAYTISGTTVAAGAVIDEDCYATDSTAFRAATTTATGAEEQLIEVRNINTISNFVWEDGGISEDPKVPLRIAVTMSATGTAVAGDITLVCLYTVD
JGI24651J20071_1004453	JGI24651J20071_10044531	F006550	MQAKINKREIDYKGQQLWLNPVDKTVYATDGAPTYSFSEVNGTPIYNYNSHFDAVKTAKDKLGTSYYHDAFVDPEFKSLAEDYVSDVKSGGRQRQAALRSSVNSAVDIVNVWETVLGKRDRVYAAKNLAKEIAVPNLLISIDTVTKFTGMEKLDEGMRARVKELPYTRATFTAAKYGLKFIIHEEARLKNVHNVLQDSIQVASTKIEQRQSFDVIDVVETNTAQAAIAVWDTFVASTDRSTGDPTIDIGIASLNIEGSGVGGRLNRVGMHQLTFAKFTGNSFLRGVASIGPRDYNYEPGTSELVGIPGIGLVLDNGIKQGDVHCVDTELEPNCALFQGPQRVGSQHDEETGDDKYFIIDYHLAAKIQAETGRLITGAITPIDWS*
JGI24651J20071_1004453	JGI24651J20071_10044532	F060053	MAFGLIPAGTITRETIISTRRIPIAGTTTXTKGNVCELVGGYLANSPTTATVDVNXFVALETIDNXGGSAGDLSAPVAVSGHYVTVVADGAIRPGARLQISASTAGQVITTGGGGNKQIGWYTGKEGGIIAKAATTPFQETFTDDSDFPPVAAADGDIIEIYLGL*
JGI24651J20071_1005135	JGI24651J20071_10051353	F051979	MIDELFAQRVFDRIDKFDDKIDNLCDRMMKVELEVTNHLNTVTENSAKKEKKFYILIAXMGTLFAAVTLFQSL*
JGI24651J20071_1006136	JGI24651J20071_10061361	F036429	MATTKSVEITNLDATPRTTLEAASAGGKLRVWMDTIAVGTGDLDDNDVIVMAQVPSNAKLVSLQVYNDDLNSGSGTFNVGLYNGPQAYTISGTTTDADAVIDEDCYVTTSAQFQAAVTAPAELLAETRNVNAIANFVWEDGGVSEDPKVPLRIAITMNATGT
JGI24651J20071_1006711	JGI24651J20071_10067111	F082793	MAEVIPSKDEIIHAESIAIAGDAAETLVTAGATIPQNAGDIIVVCPSGDSLHWAPSVTPTSSLGRPITLGHPGRIPHTFNKTAKLISDDGSDATC
JGI24651J20071_1006711	JGI24651J20071_10067112	F010945	VVTRTDCPCGKADLSSAQMTMHRRSKAHKDWAAENGEIEDVAPAGDSDFEGILEAARQGEDVRHIAKMARSIFRARGWPNDEHPETVRDWLNLHNIPIIDVPIHSDPDEQRKYVAAETERIRLAGWGKGWAIT*
JGI24651J20071_1007442	JGI24651J20071_10074423	F090505	KLFSIFLEEWSRPTLGQQLKIKGTLFQVDRTDPTSNPAGQMVKIFVSPYNPNKPFARSMRIGRRMRDSVRY*
JGI24651J20071_1007464	JGI24651J20071_10074643	F056907	VGIKLPIGEYEAIITSLGVVDNVKCGKFIADIFKPGYKIQHRDYPSTDVKDNGIFRYKEKVGYEFKPSRNWGFAKFCGILGLEQKDGDKIALPYLKFDMIDGLRVVVEINYKNFVNESGNPVRYPVGTLKKKIGDVPF*
JGI24651J20071_1008152	JGI24651J20071_10081522	F013236	MEWIQSHWVSIVGTLAVIGGGMYIPFVRGLVITGLKTVVSETVLKKVAIQIIGKLVKSSKNKLDDVWFAEFKKNVEDA*
JGI24651J20071_1008230	JGI24651J20071_10082301	F045157	NAPRVVKSGVAKSGTSSGREGIRNKISQLKKTGHIREAQSALMDMINLKSQQKR*
JGI24651J20071_1008737	JGI24651J20071_10087373	F032241	LTMLEMLEIQFASNTKRLQVTITEMSKAVLRFRDEYKKEHGEYDEADFIKSLCSLTGFSSAYFTMVEAINRADEDMKESVLSDKVGGYAPYEIEKATKDEHFRRGITDAYLESEKQIGALAPRALKYDLKIIEAEENLSPPEKRLLAKQMMDDFTHKGGRTRDTEPHFLLYKQKAMKFLREVQHWNLNGLKNQEVLTLVGLIEGVYNHFKEDRRLNGQMFSRKTGENIFGAKETNKG*
JGI24651J20071_1008872	JGI24651J20071_10088721	F080139	ITGALPDRWVQKIPVLGTVWPIFNWMAGNIFNNINHPKGMAAAIEVEKEIDEAKAKVRERVGMPDVLGGM*
JGI24651J20071_1008872	JGI24651J20071_10088722	F046426	MKLRLKLGSALVCLMFSAGCSILPEMVAPVANFALGLYEADDYYSKECLWYDEVRLNEDTKEWFKDNNPPEVVIKDLATVARNNDIFKEVCPSDDDDSNADH*
JGI24651J20071_1008958	JGI24651J20071_10089585	F042382	VSMEVICYKLTEIHKAVQKNSKDIEDLKHQVSMGKGGIKAIFIVGSLIALTLGVLKFYKF
JGI24651J20071_1009183	JGI24651J20071_10091831	F001536	MIKKWIKSLIEKVFGKFCKCEEPITLEDEEKYLAEEKALADHAESFKEIIEPEKIQCNTHSRFKKSCPICVEAAK*
JGI24651J20071_1009263	JGI24651J20071_10092632	F010945	VVTRTDCPCGKADLSSAQMTMHRRSKAHKDWAAENGEVEDVAPAGDSDFEGILEAARQGEDVRHIAKMARSIFRARGWPNDEHPETVRDWLNLHNIPIIDVPIHSDPDEQRKYVAAETERIRLAGWGKGWAIT*
JGI24651J20071_1010083	JGI24651J20071_10100831	F004114	MSGIVGSKLNIRGSGRIAKLGTDGQALTSSGPGVQANYEDLAAGISWQSVV
JGI24651J20071_1010153	JGI24651J20071_10101531	F022674	MMRYLVLFLFLTLFLSACDNVRHKIGVSAKPFATDGKFEDSAKINYTIIFGKVRNK
JGI24651J20071_1010250	JGI24651J20071_10102503	F014746	MGLKQPMMYEMPPPPAVDPEVAVKEAESKAKLEAEKKKAISARMKGRGGTILTGGTGLEDEASTAATSLMKY*
JGI24651J20071_1011221	JGI24651J20071_10112211	F004818	VKRFITWRINGLFVAEKRLKELLKADTKPGASDKELDGLYKMISIQLKAISDMQNEIITLQLIDEETKK*
JGI24651J20071_1011532	JGI24651J20071_10115322	F037257	MKKFTLEVSHASPAQLSTIALELKIMANGWEKHGPRISINGQAVLPPKLRMATTELSNKRATGTTSKRHNSTTYI*
JGI24651J20071_1011532	JGI24651J20071_10115324	F032040	NELIYPVCQDAILFSCIAGSKTFCSITIANIKKLGYKFETQKEEI*
JGI24651J20071_1011551	JGI24651J20071_10115512	F078927	MANVDKAFGLNPYKGNSAGSSVQIVNTYLINPSGYGTSIYQGDITIFASGYINTAAVSSANVVGAFS
JGI24651J20071_1011665	JGI24651J20071_10116651	F011409	PERVQFACGKDVKAEVEYIEEKGQTTGRIRILRVIESGYEEGLYEGSNRY*
JGI24651J20071_1011696	JGI24651J20071_10116963	F052891	VKDWEHYRNLVGHVEALNYVREEIRILLKNQDIIDD*
JGI24651J20071_1011726	JGI24651J20071_10117262	F003761	LAAIVELNTTEIWSHEPCWYIGEFNQPAPDSQSVRRSQTITVIRNDKRVKLTRDLGDARLFGEEFQLICGAPDGKGGGEAMYTVGEALQMAQDMNNMPPPKTEVTPKDWNKIFWENIEERNLWRRASSTFGALFRKQRNT*
JGI24651J20071_1011944	JGI24651J20071_10119444	F001487	MKKFTIEVSHASTAQLSTIALDLKIMSNGWEKHGP
JGI24651J20071_1011991	JGI24651J20071_10119913	F015152	MKKINQSDVDKVYNEVFRLMTRLCRDYEPLAVSGVMLAQALRLYKTTLPMEDFDLLIEEVMATVRDDVKPFD
JGI24651J20071_1012433	JGI24651J20071_10124333	F008755	MNKSRVARDLWRKVFNDNIINLSDGDARKQVVREFLADPVNKKAGWKAKDARFMRLGFQKVAKENNFNVMNIGVTPTPSRSKTQKGSMNINVKSKQKNPTPMIDAIKPPTEEEKKFGALPQTPQLVGQQAQAVQYSAQSVGQIFETLFNIFS
JGI24651J20071_1012592	JGI24651J20071_10125922	F074980	STIDEGPSDKQVAFLRGNTLKYTGEIPKTKRQASQLIQELSDKAGIPRKPNPSYTPKPTPVEDLSIVHEEATEEDLKYSEPLLKAAAKFHRLAVTAIKKRGEPLRGDIINAERNFLVKVEKLRSCNNG*
JGI24651J20071_1012670	JGI24651J20071_10126702	F005071	MSQLNTKEKCTIRDLIKIEIKSLTKSGEDGYGQYRYLEDEYCAFLLKLGRKLKLDTQQKIKAKKVYR*
JGI24651J20071_1013835	JGI24651J20071_10138351	F054156	MLEALLLTGHIPEIRWKQDDDLCDCTFQRIGWWTNPYLARTMEVRLCCIWKILAEQNPEIAALMQEIPAFDDYNRDCWVSEPAAWDSKDHDMPR
JGI24651J20071_1014094	JGI24651J20071_10140942	F029903	MAKGNFSPIPNSLEVHAVTSSATSLGSVPSAANYGEGYVRSYAVVETRDGTDPTTTKGKEWAAGDIIVLRSKDELDNFKVIREXASNAATIDVEYWNKTPGMN*
JGI24651J20071_1015705	JGI24651J20071_10157051	F001487	VKKFTIEVSHASPAQLSTIALELKIMANGWEKHGP
JGI24651J20071_1015953	JGI24651J20071_10159533	F002232	MSVKAVKKIRKLKDELDKLHEKEDDLLFKIDEVIDELEDPXEDXXVGILIVCILC*
JGI24651J20071_1016132	JGI24651J20071_10161321	F105497	FGGSAGLKAMWKNMLKGLSKGRDKPVKRLFPTLSAREREMEKLVMGTPEQKAFREGEVMHKIEGIDLLINRMKHDKKIIERQAKNKAMKDEGLDFLMKHLEETVMPDIYGPHLKKYTNIDKDILQMENIKKNLIMKDRKLNAEGGRIGYAGGGKTGLPAVTMGTPQMNMQQPQMPAMGPQPAGIPGGTIVAQNQMQQSPWMGSQMQQ
JGI24651J20071_1017205	JGI24651J20071_10172053	F011673	MNNQQSKVLPIYLQPRILAAVSFIHRSPNKEIGLERINKVKRELSDRELMYVLSLLVFDNILDIVQNSDEFKNLVPTKRTIH*
JGI24651J20071_1017407	JGI24651J20071_10174072	F003410	WKQRRANRTDSRMKIIIILATGALITFTADHRTNPDCFTKGYEVLEKIATYHGPGPNQGWVLNDSKVXVGGWYCK*
JGI24651J20071_1018168	JGI24651J20071_10181682	F013312	MLFVKGRNFTWVFNITLFIHRNQAYDVTILGLISSADNTTCNLLAVAAVTFITSLSATTSGAESSSDVPLADIALTLKRLKTASSVSVIVIVIVSAFPESSDTSIDLITAVVADGTVYNV
JGI24651J20071_1019190	JGI24651J20071_10191902	F002612	DAIRLAERIFKIIRARQAQINEIVTSNQVKDWNDYQNHLGQLDTLNYIEQELSDLDLLKKQEQNEHSDFTETRR*
JGI24651J20071_1019828	JGI24651J20071_10198281	F094395	MAEPFGVHFEVTGPVFDGTGLRAMQGIVNRGLLDIATLEGANKVKDQLYGPPASQYWQSSKSERHGAHTRDLKRRVAASLPSDNLAVFNAGGV
JGI24651J20071_1020096	JGI24651J20071_10200962	F001594	SLDPDKLNLEKKDLLDFCHGCIDEWKKNKLGNFKFIVSMELIIAGVRITPDDVLKAVWKKILVWFWDLQYQNAVAEKEGMLKRLSGIGSS*
JGI24651J20071_1020109	JGI24651J20071_10201091	F048920	ETGMVVEPXPXPDHELVNELALAKAEADEATERYKILCFEVKQHIQAKPGRVVIFGDTHEAVLEEVWGKEGRYDQTRLVQFRERADQHTAELLYGDAWIPEATKIIAGHWDITQLKALAKRHGDLGEVEDAKIPPGYQVKLVSRTLDSRKLKKVTA*
JGI24651J20071_1020112	JGI24651J20071_10201122	F081451	VLFSVLLYASVSGCNGVKHVIQITEPTDHTQGDDGGKIQYKIIFGDKSQKE*
JGI24651J20071_1021597	JGI24651J20071_10215971	F011673	MNKQSKILPICLQPRILAAVSFIHKSPDKEIGLERINKVRRKLSDREMLYVLSLLVFDQLLDMVQDSDEFKNLVPIKRTI
JGI24651J20071_1022403	JGI24651J20071_10224031	F005094	MGRATNSFTHWVGDNSMEGERVTLPEKELWVAVLSRAALDACKGPPRLNLNLPSNITRKHYYTYDRDQARHFFMEGGSHFN