Scaffold JGI24525J20082_1020585

Overview

Basic Information

• Taxon OID: 3300001722
• Scaffold ID: JGI24525J20082_1020585
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 673
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.9998
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010690	Metagenome / Metatranscriptome	300	Y
F068931	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24525J20082_10205851	F068931	GAGG	MSSFKPALIKPVYDVSNFGEDVSLPLNCLSGSTVTLTPSTATFVQVLEDSKVPIDQVDLFITDSDKMAMVYPANDTDFDT
JGI24525J20082_10205852	F010690	N/A	STTPPNRPEHFYHKPDNESTFTTATTTTGNDFTINDGMWLEDMYVSVFAGTPTVSQSFSGYGTFSSNDFGNSLPLKVAMQPGACGLAGTTTPGNLALASYHNTHMPMKTSCKISTSFTNDVAQSATSRFIMGVGYTKQ*