Sample 3300001722

Basic Information
IMG/M Taxon OID	3300001722 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0067852 \| Gp0056825 \| Ga0006036
Sample Name	Marine viral communities from the Pacific Ocean - LP-50
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300001722 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0067852 | Gp0056825 | Ga0006036

Sample Name

Marine viral communities from the Pacific Ocean - LP-50

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	99016257
Sequencing Scaffolds	32
Novel Protein Genes	37
Associated Families	33

Dataset Contents

Total Genome Size

99016257

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	3
Not Available	21
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Rhodopirellula → unclassified Rhodopirellula → Rhodopirellula sp.	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → Viruses → environmental samples → uncultured virus	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium

Not Available

All Organisms → Viruses

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Rhodopirellula → unclassified Rhodopirellula → Rhodopirellula sp.

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria

All Organisms → Viruses → environmental samples → uncultured virus

Ecosystem Assignment (GOLD)
Name	Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Ecosystem Assignment (GOLD)

Name

Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → marine water body → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	Pacific Ocean
Coordinates	Lat. (^o)	49.9998	Long. (^o)	-145.0	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Pacific Ocean

Coordinates

Lat. (^o)

49.9998

Long. (^o)

-145.0

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000937	Metagenome	828	Y
F001536	Metagenome	675	Y
F002380	Metagenome	566	Y
F002612	Metagenome / Metatranscriptome	543	Y
F002748	Metagenome	533	Y
F005314	Metagenome	405	Y
F005861	Metagenome	388	Y
F006323	Metagenome	376	Y
F007824	Metagenome	344	Y
F008888	Metagenome / Metatranscriptome	326	Y
F009368	Metagenome / Metatranscriptome	319	N
F010690	Metagenome / Metatranscriptome	300	Y
F012282	Metagenome / Metatranscriptome	282	Y
F017400	Metagenome / Metatranscriptome	241	Y
F019729	Metagenome / Metatranscriptome	228	Y
F020384	Metagenome / Metatranscriptome	224	N
F020789	Metagenome	222	N
F023881	Metagenome	208	N
F032040	Metagenome	181	N
F033218	Metagenome / Metatranscriptome	178	Y
F036423	Metagenome / Metatranscriptome	170	N
F037815	Metagenome	167	Y
F040061	Metagenome	162	Y
F040146	Metagenome	162	N
F040337	Metagenome	162	Y
F040680	Metagenome / Metatranscriptome	161	N
F047914	Metagenome / Metatranscriptome	149	N
F048564	Metagenome	148	Y
F052645	Metagenome	142	Y
F056907	Metagenome	137	N
F056915	Metagenome	137	N
F058080	Metagenome / Metatranscriptome	135	N
F068931	Metagenome / Metatranscriptome	124	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
JGI24525J20082_1009863	All Organisms → Viruses → Predicted Viral	1598	Open in IMG/M
JGI24525J20082_1009983	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1575	Open in IMG/M
JGI24525J20082_1013129	All Organisms → Viruses → Predicted Viral	1117	Open in IMG/M
JGI24525J20082_1013844	Not Available	1050	Open in IMG/M
JGI24525J20082_1014040	All Organisms → Viruses	1031	Open in IMG/M
JGI24525J20082_1014183	Not Available	1020	Open in IMG/M
JGI24525J20082_1015653	Not Available	910	Open in IMG/M
JGI24525J20082_1016078	Not Available	884	Open in IMG/M
JGI24525J20082_1016355	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	867	Open in IMG/M
JGI24525J20082_1016724	Not Available	844	Open in IMG/M
JGI24525J20082_1017201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	816	Open in IMG/M
JGI24525J20082_1018139	Not Available	769	Open in IMG/M
JGI24525J20082_1018653	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	747	Open in IMG/M
JGI24525J20082_1018758	Not Available	742	Open in IMG/M
JGI24525J20082_1019177	Not Available	725	Open in IMG/M
JGI24525J20082_1019379	Not Available	717	Open in IMG/M
JGI24525J20082_1019410	Not Available	716	Open in IMG/M
JGI24525J20082_1019455	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Rhodopirellula → unclassified Rhodopirellula → Rhodopirellula sp.	714	Open in IMG/M
JGI24525J20082_1020353	Not Available	682	Open in IMG/M
JGI24525J20082_1020356	Not Available	682	Open in IMG/M
JGI24525J20082_1020585	Not Available	673	Open in IMG/M
JGI24525J20082_1020887	Not Available	663	Open in IMG/M
JGI24525J20082_1021862	Not Available	633	Open in IMG/M
JGI24525J20082_1021955	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
JGI24525J20082_1022539	Not Available	615	Open in IMG/M
JGI24525J20082_1023044	Not Available	600	Open in IMG/M
JGI24525J20082_1023161	All Organisms → cellular organisms → Bacteria → Proteobacteria	597	Open in IMG/M
JGI24525J20082_1026518	Not Available	526	Open in IMG/M
JGI24525J20082_1026744	Not Available	522	Open in IMG/M
JGI24525J20082_1027023	All Organisms → Viruses → environmental samples → uncultured virus	517	Open in IMG/M
JGI24525J20082_1027564	Not Available	508	Open in IMG/M
JGI24525J20082_1027763	Not Available	504	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI24525J20082_1009863	JGI24525J20082_10098633	F009368	MVFHFDAAIQIMEEILTHELVNPDELYEILEYKEKASDSVQEERLWKMFKGFLIRADRLSADVIPFSPELRGPDR*
JGI24525J20082_1009863	JGI24525J20082_10098635	F052645	LKISNTLDFEDALEEHKKKEKPIGYSVTCFPVGCVTSLSFLNSRNDVD*
JGI24525J20082_1009983	JGI24525J20082_10099831	F005314	MVKPIDITNTVIVPKPQPKYDKLKSFFIGRAPIDNTDEDSVEVEANPKDKIKQPHLDNSVIKDTEWSDLY*
JGI24525J20082_1009983	JGI24525J20082_10099836	F033218	MAQPKTKKVICPRCTGNGYFKVKESVERQVDKVVQCPMCNSQGEIDEEKADTIYVDS
JGI24525J20082_1013129	JGI24525J20082_10131291	F002748	MTSIMQLVLFTLGLLLFGFGLFVGVYPEGDQTVGLLLMFGGLAQIVYSLGVGDE*
JGI24525J20082_1013844	JGI24525J20082_10138442	F005861	MKFRTLKLFKRRRDARKKIQTTEKAVQALIIGLVLVLLLLVGCENGARHSLELTEPTDHTTGDDGGKLKYKIIWGSTKHND*
JGI24525J20082_1014040	JGI24525J20082_10140403	F040061	KKIETFMPEIVQGKYIIYPTGGWHLFHKQAPKGSIYTKPIWPFITTNSGHNKVKRISTYFSFSSNYMMVSIDDENYPGCPKMMHVIVAKAYIWNADPTKYYQVSHKRDDRCNYLPENLEWKTGSGNHTGKKNKRISSRREDYQFAKSNGFIL*
JGI24525J20082_1014183	JGI24525J20082_10141833	F020789	MANNTNKYFTWYVKSRDKMCTFLGADEFDGFVSRQWTDKNGNDCYNFWDIEAKHPRTAVNCKWRNA*
JGI24525J20082_1015515	JGI24525J20082_10155152	F040680	MQTDVKQTIAVTSSPAQLQKYIKTVATNITKARIMAISAQASTADASVKIYNSVAGTTASDLVAELKFGTADGEWTHFYVPGQGIYCDTGMYAVLAQCD
JGI24525J20082_1015653	JGI24525J20082_10156532	F020384	MQHKKIHSYQRSLQKLRNIVSETLRSSGQGRQIEFDNQMRRAIRHIQIIKRNVPSGEKGDLAMVEAYKLYDRLQRLSQYPTYFVDNTRKNPGRVASDRGRDYTNARPASVRWDVAAMMAVPMGGPDRNWWRPPPRPLPVKHYTREELEHEYPGFTVSKKREEDA*
JGI24525J20082_1016078	JGI24525J20082_10160783	F001536	MIKWIKSLIEKIFGKFCKCEEPIILEKKIKPQAVKEIITAEPEKIQCNTHSRFKKSCPLCVEAAK*
JGI24525J20082_1016355	JGI24525J20082_10163551	F023881	SLMATRIKSKFKTVKLMTPKGVSEPYVGSYISGKLGGVKVVNESLKKYYGKKVDPNWTSKT*
JGI24525J20082_1016724	JGI24525J20082_10167241	F036423	MNSAFECRLTVEDVSATELVVGVIDTAVTGSVVDITDGLYFSNFSDPTSITAGTGLYLHSEKNGTITSSSALVDPYTGDTFVMEDGSLQAASATQLATPSNSFIFGFNIVPKGLNGNTNTAVIQSYLGPVGKQPMAAESIATTNLPDDLGLAIMIGTKNNTTQGATIWVDYVKMISSRSFGSSTTK*
JGI24525J20082_1017201	JGI24525J20082_10172012	F019729	GKHCGSKSIMSHLRDTNLSWGRHLYFATGLALKLFLLSLIALVHGLLPFIFTSKVSDEVYKLNEELS*
JGI24525J20082_1018139	JGI24525J20082_10181392	F007824	VPAPMFSRIYKLNSVENSGSFTWHGYRVSLLRKVDNASIYQMAREFHNSLKKSNAAVEKKEESNY*
JGI24525J20082_1018653	JGI24525J20082_10186533	F000937	GEAKLVSFPFEGTVMECFAYGDQLRVKHATYNEERNAWFMNDGPGTWQGFICG*
JGI24525J20082_1018758	JGI24525J20082_10187581	F006323	MPLGKRQQRLGNLTDKDINFPKHLTPEIIHCALFVHNAPTKAEIAIRSEYCAKQIGNEAMQYAMALLVLPHLIDNTKDTQEYKDFLASRKKTVH*
JGI24525J20082_1019177	JGI24525J20082_10191772	F012282	KLITSNVLFTLSAAEAAICXNYPVTVSSTASSGSTVTGQSSYYLLAAGGLETELTCRVLGRSKLPDEGNNDAYPIVEVWLNTHRDRYVTATASTA*
JGI24525J20082_1019379	JGI24525J20082_10193792	F058080	VNDDEWMYHNPDVWTKVLDDQENAQSWAHQQQLEEQQMAFEHKEGRGSGWSNRSDNPKAPKLNGSMKWKGETINWAIWKNDKKKDTDPDWGIKLEEPREQSYTAGPKAGSFVPDPKRERTWNKPEKDDEFPF*
JGI24525J20082_1019410	JGI24525J20082_10194103	F002612	RARQTQIIEIVTSNQVKDWNDYQNHLGQLDTLNYIEQELSDLLKKQEQDEHSNFTETRR*
JGI24525J20082_1019455	JGI24525J20082_10194551	F048564	NHTDQIAQYAKLETLYSTIIYLQKEIVKEQDKLAQLKKEEKNGK*
JGI24525J20082_1020353	JGI24525J20082_10203532	F007824	MQDQFESDPKTNKNVPAPMFSRVYKLNSVENSGSFTWHGYRVSLLRKVDNASVYQIAREFHNSLKKSNAAANTKEESNY*
JGI24525J20082_1020356	JGI24525J20082_10203561	F008888	MAHEKQAPLGKSKKIGIPSQNLIIDPRGKSSIRGRSARIATGDKVTVKGTKTRKPVTATWF*
JGI24525J20082_1020585	JGI24525J20082_10205851	F068931	MSSFKPALIKPVYDVSNFGEDVSLPLNCLSGSTVTLTPSTATFVQVLEDSKVPIDQVDLFITDSDKMAMVYPANDTDFDT
JGI24525J20082_1020585	JGI24525J20082_10205852	F010690	STTPPNRPEHFYHKPDNESTFTTATTTTGNDFTINDGMWLEDMYVSVFAGTPTVSQSFSGYGTFSSNDFGNSLPLKVAMQPGACGLAGTTTPGNLALASYHNTHMPMKTSCKISTSFTNDVAQSATSRFIMGVGYTKQ*
JGI24525J20082_1020887	JGI24525J20082_10208872	F056907	MSGNAYYIPGDTGVGIKLPIGEYEAIITSLDVXDNVKCGKFIADIFKPGYKIQHRDYPSTDVKDNGIFRYKEKIGYSFKPSRNWGFAKFCGILGLEQKDGDKIALPYLKFDMIDGLRVVVEINYKNFVNESGNPVRYPVGTLKKKIGDVPF*
JGI24525J20082_1021862	JGI24525J20082_10218622	F002748	MTSIMQLILFTLGLALIGFGLFVGTHPEGDLTVGALLMFVGIAQAVYGLSVDNDS*
JGI24525J20082_1021955	JGI24525J20082_10219552	F047914	RTKVEIEIYSDKDGDYFIEVLNQNHPWVIGAFYTLDEALRYTYFELDNPIGSIEVIDVSKGDIAFSFEFETPPTESNLKNVIPLRSKNGKNK*
JGI24525J20082_1022539	JGI24525J20082_10225392	F056915	MADPNKYKSLSVNINDWQDLGVISSRTNRTRSKMIARLIXFYKENRGDKKNAKSNSKGG*
JGI24525J20082_1023044	JGI24525J20082_10230441	F002380	LMIASLLGILAGFILLMLGVIVGIHTIHMTVGLLMMFAGLVSMLHFLPYYKEYKDE*
JGI24525J20082_1023161	JGI24525J20082_10231611	F017400	AQVLLNDPLLKQAFEDLLETYKQEIFHTSFADDEKRRSLWMAYNMLDKIKGHLQTVMESGKLTQKDLEFLNKS*
JGI24525J20082_1026118	JGI24525J20082_10261181	F032040	VWGNELIYPVCQDAILFSCIAGTKTFCSITIANIKKLGYKFETQKEEV*
JGI24525J20082_1026518	JGI24525J20082_10265181	F000937	INGELSLPSFPFEGTVHECFDRGDKMRVELATYNEERNAWFLNDGSGTWQGFICG*
JGI24525J20082_1026744	JGI24525J20082_10267441	F037815	VGVAGFPGWVQGEADYIAFKXIKYPWLIVNRKQLWEMVETKLKERNYSPSIKPWYEKEAYATYDRSYFGKKDKFCWVPYEDI
JGI24525J20082_1027023	JGI24525J20082_10270232	F040337	MRDITERGQMKELEPNTLWLVIKHVHYGNFADDYSVPKFTKNKGQADQYLHSLNMLNDSKTTSYFLVSVPHE*
JGI24525J20082_1027564	JGI24525J20082_10275642	F000937	MVKEIVLIILLINGELGLPSFPFEGTVHECFEYGDKMRVELATYNKDRNAWFLNDGSGTWQGFICG*
JGI24525J20082_1027763	JGI24525J20082_10277633	F040146	XMXINKKGQPXAKRVXMTHGGGVGIQTHGNKLAKALNTKRPDQSLFQNEDGYLTGGIPIRS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300001722: Marine viral communities from the Pacific Ocean - LP-50

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences