NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24518J20066_1015892

Scaffold JGI24518J20066_1015892


Overview

Basic Information
Taxon OID3300001716 Open in IMG/M
Scaffold IDJGI24518J20066_1015892 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-42
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)555
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.9996Long. (o)-144.9998Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045147Metagenome153N
F054091Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
JGI24518J20066_10158921F054091AGGMIIEEIPFFTEFVLLGIILGFGYGFTKXFLNHAKDKNKVKRTERKQEKDHNLENELDKYLDNAPAIIHHLESEIANLKEKGSTPEQTQR
JGI24518J20066_10158922F045147N/ANMAATGEQVAIINFSTTVSAKVFDKPLTFQIKVNTDNATGTYQTGIIPLFCYFGAAVPKTWTTSSVLLHIHADLAHAFPIFRDQDNMNMLDTGIGL*

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