| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300001716 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0067852 | Gp0056797 | Ga0006066 |
| Sample Name | Marine viral communities from the Pacific Ocean - LP-42 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 53391889 |
| Sequencing Scaffolds | 23 |
| Novel Protein Genes | 29 |
| Associated Families | 25 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium | 1 |
| All Organisms → Viruses → Predicted Viral | 1 |
| Not Available | 9 |
| All Organisms → cellular organisms → Bacteria | 4 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 3 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Selenomonadaceae → Megamonas → Megamonas hypermegale | 1 |
| All Organisms → Viruses → environmental samples → uncultured virus | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 49.9996 | Long. (o) | -144.9998 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000423 | Metagenome / Metatranscriptome | 1156 | Y |
| F000567 | Metagenome / Metatranscriptome | 1020 | Y |
| F001594 | Metagenome / Metatranscriptome | 666 | Y |
| F002612 | Metagenome / Metatranscriptome | 543 | Y |
| F002811 | Metagenome / Metatranscriptome | 528 | Y |
| F007532 | Metagenome / Metatranscriptome | 349 | Y |
| F009538 | Metagenome | 316 | Y |
| F009754 | Metagenome / Metatranscriptome | 313 | Y |
| F010368 | Metagenome / Metatranscriptome | 305 | N |
| F011291 | Metagenome / Metatranscriptome | 292 | Y |
| F016594 | Metagenome | 246 | Y |
| F021786 | Metagenome / Metatranscriptome | 217 | Y |
| F025390 | Metagenome / Metatranscriptome | 202 | N |
| F032038 | Metagenome | 181 | Y |
| F034709 | Metagenome / Metatranscriptome | 174 | Y |
| F037765 | Metagenome / Metatranscriptome | 167 | Y |
| F040679 | Metagenome | 161 | Y |
| F045147 | Metagenome | 153 | N |
| F049698 | Metagenome | 146 | Y |
| F052638 | Metagenome | 142 | N |
| F054091 | Metagenome | 140 | Y |
| F062831 | Metagenome / Metatranscriptome | 130 | Y |
| F073659 | Metagenome / Metatranscriptome | 120 | N |
| F081753 | Metagenome | 114 | N |
| F097508 | Metagenome | 104 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| JGI24518J20066_1001402 | All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium | 4120 | Open in IMG/M |
| JGI24518J20066_1003798 | All Organisms → Viruses → Predicted Viral | 1804 | Open in IMG/M |
| JGI24518J20066_1004991 | Not Available | 1376 | Open in IMG/M |
| JGI24518J20066_1006090 | Not Available | 1149 | Open in IMG/M |
| JGI24518J20066_1006106 | All Organisms → cellular organisms → Bacteria | 1145 | Open in IMG/M |
| JGI24518J20066_1006374 | Not Available | 1106 | Open in IMG/M |
| JGI24518J20066_1007431 | Not Available | 974 | Open in IMG/M |
| JGI24518J20066_1007787 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 934 | Open in IMG/M |
| JGI24518J20066_1009256 | All Organisms → cellular organisms → Bacteria | 812 | Open in IMG/M |
| JGI24518J20066_1009532 | All Organisms → cellular organisms → Bacteria | 793 | Open in IMG/M |
| JGI24518J20066_1010836 | All Organisms → cellular organisms → Bacteria | 719 | Open in IMG/M |
| JGI24518J20066_1011008 | Not Available | 711 | Open in IMG/M |
| JGI24518J20066_1013071 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 633 | Open in IMG/M |
| JGI24518J20066_1013493 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 619 | Open in IMG/M |
| JGI24518J20066_1013898 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 606 | Open in IMG/M |
| JGI24518J20066_1014597 | Not Available | 587 | Open in IMG/M |
| JGI24518J20066_1014838 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. | 580 | Open in IMG/M |
| JGI24518J20066_1015892 | Not Available | 555 | Open in IMG/M |
| JGI24518J20066_1016652 | Not Available | 539 | Open in IMG/M |
| JGI24518J20066_1017372 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 524 | Open in IMG/M |
| JGI24518J20066_1017638 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Selenomonadaceae → Megamonas → Megamonas hypermegale | 519 | Open in IMG/M |
| JGI24518J20066_1017821 | All Organisms → Viruses → environmental samples → uncultured virus | 516 | Open in IMG/M |
| JGI24518J20066_1018020 | Not Available | 512 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| JGI24518J20066_1001402 | JGI24518J20066_10014023 | F052638 | MIHWHTEKKIRWHMGFMPFAKFCMRRLIKKIYKDGYYDGVAFAKTRNKIIRGLDDISMTPSQWMTALRLTQKIDNEGRKILFVDGVKIK* |
| JGI24518J20066_1003798 | JGI24518J20066_10037982 | F011291 | MDKYEINVWKDAELLTKEVVDFPSNEECYSYVTDKYYAPGTWTGSHQNKAGVTLNRPPMGIRITWSKKGNTDYKPKKLSAEEKKLQRELYDSITPEVIEELGPNEMLAKVRKDYYGHPDAKGMEDKK* |
| JGI24518J20066_1004991 | JGI24518J20066_10049911 | F034709 | MQNQKQTDRIKKQLEKLSTVMQKIEQVAKEEISSNEDYLQVCGALLAVTRNMYVEALGPFDASRMFEAVAQSFHIQEELIEFFREGEKPTXH* |
| JGI24518J20066_1006090 | JGI24518J20066_10060902 | F097508 | MSKDWLKGRGQVSIPKPAKAGVNSDKGTVKGGAGQPLKMAGKGPVKGTMQAMGAAKKGGKYTWTGANDTKW* |
| JGI24518J20066_1006106 | JGI24518J20066_10061061 | F037765 | MTTHFSSGVTNVKGKENATSLFSGIKQPLITGATAPAEFAYQNDFQTYNASDWQTVTSTGASDYQLADYAFGWLRQGDGAPAAGEIQGVADYECF |
| JGI24518J20066_1006374 | JGI24518J20066_10063742 | F081753 | MIKKLIEKIFGRFCKCEEKTKTTSELLREGFDEEQETLKLEESVVEKIQCXTHSRFKXSCPXCVEAAK* |
| JGI24518J20066_1007431 | JGI24518J20066_10074312 | F025390 | SPLKNAMMPDPFPVTSTQGGGYDFLGQTSFFDDFYDIITRSNTSSNGTGGSPGWYVAQTSAGNQVLTPTNLAHGGWLKMDETVGTNDAVNQLSTFTNFQLSTLMNSAFECRLTVEDVSATELVVGVIDTAVTGSVVDITDGLYFSNFSDPTSITAGTGLYLHSEKNGTITSSSALVDPYTGDTFVMEDGSLQAASATQLATPSNSFIFGFNIVPKGLNGNTNTAVIQSYLGPVGKQPMAAESIATTNLPDDLGLAIMIGTKNNTTQGATIWVDYVKMISSRSFGSSTTK* |
| JGI24518J20066_1007787 | JGI24518J20066_10077872 | F002811 | MTTHFSSGVTNVRGKSGGTSLFSGIKQPLITGGTSPQEFAYQDDFSTYNASDWQTVTSTGASDYQLADYAFGWLRQGDANPAAGEIQGVADYECWQYSSTRAWYFETKIAVTDVSEANLWVGFAQNGYADSDTLPNDGIGFSHLQDTTTIQFVSRKGGAGVSFDMLDADGTYTFADSSIATQSATVLAEPSNPVRLGFLFQPLGSEPGQTALQYKL |
| JGI24518J20066_1009256 | JGI24518J20066_10092561 | F000567 | LMKESLLKLTHKITTWHEKMFKYITLKSKTSIFFTWLLVFICLYEIFEHIIIPIFLIWWGLS* |
| JGI24518J20066_1009256 | JGI24518J20066_10092564 | F049698 | VNKKHYAFFLKKNRRKNPIAKDLSDGRYHQRVVKDKTNYSRKEKHGQTDRHYEHSDSS |
| JGI24518J20066_1009532 | JGI24518J20066_10095324 | F000567 | MKENLLKLTQKITTWHEGMFRYLTLKSKTSVFFTWLLVFICLYEIFEHIIIPIFLIWWGLQ* |
| JGI24518J20066_1010540 | JGI24518J20066_10105403 | F016594 | MTKFILFMWLCSGVAHDCKRIVIPYTTFDSYRDCSLYGYEHTVNILNNMPEEELEKWQIHTRFSCKAEQTI* |
| JGI24518J20066_1010836 | JGI24518J20066_10108361 | F000423 | MSNELKQSIFYIKYYATKHKCIIERKATLDNECYEGVHKKHGYAYKRYVDLDAMEEIDNGKTQYRCASVKWT |
| JGI24518J20066_1010836 | JGI24518J20066_10108362 | F032038 | MSEVKDKKDIWLVIEKYVYSNSTPSHSVKKTATSVEEAIGFKLALEKLNEQTDVSYFLASDVDTVMNNVITAHNQSVKTKEVA* |
| JGI24518J20066_1011008 | JGI24518J20066_10110083 | F002612 | VRLAERIFKLIRTRQTQIIEIVTSNQVKDWNDYQNHLGQLDTLNYIEQELSDLLKKQEQDEHSNFTETRR* |
| JGI24518J20066_1013071 | JGI24518J20066_10130711 | F000567 | MKENLLKLTHKITTWHEKMFIYLTNKAKTSVFFTWLLVFICLYEIFEHVIIPLFLIWWGFS* |
| JGI24518J20066_1013493 | JGI24518J20066_10134931 | F009754 | WLRMGDASPVAADIAIAASEDVFQYHSQKAWYFETSIAVTDVSELNTFVGFAANGYVNPNAVPDDGIGFSHLEDTTTIQFVSRKNGAGTSFTMLEAGSTYAFADSSVTTQSATAYNMPDNNVRLGFLFQPLGTEPGQTAIQYKLFLNGNIVGTQAATTVPDDLLMELKIMYESKGILTNDLYTDYVQTVQQR* |
| JGI24518J20066_1013898 | JGI24518J20066_10138981 | F001594 | MEKTKLTKNEYLDSLDPDNLNLEKSDLINFCHGCIEEWKKNKLGNFKYIVAMELMIGAVRITPEDVMKTVWKKILIWFYDLQYKNALAEKEGMLRRLADIGSG* |
| JGI24518J20066_1014597 | JGI24518J20066_10145972 | F000567 | MKESLLKLTHKITTWHEKMFKYITLKSKTSVLFTWLLVFICLYEIFEHIIIPIFLIWWG |
| JGI24518J20066_1014838 | JGI24518J20066_10148382 | F062831 | MNKRTVKDVERRILRIMMKDEKALRELLEVETDGTPGAQLDGLMIRIEQLLGRISLNQNKLMLLQEIRE* |
| JGI24518J20066_1015892 | JGI24518J20066_10158921 | F054091 | MIIEEIPFFTEFVLLGIILGFGYGFTKXFLNHAKDKNKVKRTERKQEKDHNLENELDKYLDNAPAIIHHLESEIANLKEKGSTPEQTQR |
| JGI24518J20066_1015892 | JGI24518J20066_10158922 | F045147 | NMAATGEQVAIINFSTTVSAKVFDKPLTFQIKVNTDNATGTYQTGIIPLFCYFGAAVPKTWTTSSVLLHIHADLAHAFPIFRDQDNMNMLDTGIGL* |
| JGI24518J20066_1016652 | JGI24518J20066_10166521 | F000423 | MKSPFKQAIFYIKYYAKKHDMVIERKATLDENCFEGRHKKFGYPYKKYIDVWATEEINNGQPQYRTASKS |
| JGI24518J20066_1017372 | JGI24518J20066_10173721 | F021786 | MTTHFSSGVTNVKGKQLGTSLFSGIKQPLITGGTTPAEWAFQDDFVQFSQTTLSPWTITDPGGTAYMLAQYPQGWLRMGDASPVAADVAIAASEDVFQYNANKPWYFETSIAVTDVSDLNIWVGFALNGYANPNALPSDGIGFSHLEDTTTIQF |
| JGI24518J20066_1017459 | JGI24518J20066_10174591 | F073659 | MTESANIQFDGERKAIVSYTATIASTTAENYTFAVSAFNASTLNGKAVTRLDINRAWFNVSATAPAAAMTIEWNTSGTNELALTGVYSGEYDFTSIGGLVNPEPTDWDGGIKILFNSVTNSDTCSIVLELLKKYT* |
| JGI24518J20066_1017638 | JGI24518J20066_10176381 | F010368 | ALTDVGEGNIWVGFAQNGYADSDTLPTDGIGFSHLQDTTTIQFVSRKNGAGVSFDMLDSAGGSTYTFEDSSIATQSATVLAVPSNPVRLGFLFQPIGSAPGVTAVQFQLFLDGKSVGTQAATTVPDDLEIGINAMIAHKGTVGNDLNIDYIQTVQSRIAGTGVSA* |
| JGI24518J20066_1017821 | JGI24518J20066_10178211 | F007532 | MKDKNKTIIDYVIRWLDSNIDEPPPEGIQEDSANLKEKINLALDPKTTAQNIDDGDF* |
| JGI24518J20066_1017821 | JGI24518J20066_10178213 | F009538 | ATKQQPGFSDNQDGWQIVRNGLNFFRQYFAKEYMVLLD* |
| JGI24518J20066_1018020 | JGI24518J20066_10180201 | F040679 | SEPGQTAIQYKLYLNGNIVGTQAATTVPDTVEIGLNAMIAHKGTTANDFNVDYLQTVQQR |
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