Scaffold JGI24517J20059_1014124

Overview

Basic Information

• Taxon OID: 3300001715
• Scaffold ID: JGI24517J20059_1014124
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-41
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 527
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.9984
  • Long. (^o): -144.9944

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043344	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24517J20059_10141242	F043344	N/A	NMGDRVSVSFRQKNDWYVNKVKEEHTDESPALFHHWGGTQFPKMAFDWFKSVKKKYGKGGGDPFTRMEPRNLMVQLIAHLRNHADLRYSTLNTSKKESDWDIDPELICYSIYLGKDGSDGDNSDNGHYTIDVDTGKMYDDKEQSIG*