3300001715: Marine viral communities from the Pacific Ocean - LP-41

Overview

Basic Information

• IMG/M Taxon OID: 3300001715
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0067852 | Gp0056796 | Ga0006064
• Sample Name: Marine viral communities from the Pacific Ocean - LP-41
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 66324520
• Sequencing Scaffolds: 19
• Novel Protein Genes: 20
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2
Not Available	9
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.9984
  • Long. (^o): -144.9944
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000567	Metagenome / Metatranscriptome	1020	Y
F001821	Metagenome / Metatranscriptome	630	Y
F002274	Metagenome / Metatranscriptome	576	Y
F002811	Metagenome / Metatranscriptome	528	Y
F004463	Metagenome	437	Y
F005314	Metagenome	405	Y
F006550	Metagenome / Metatranscriptome	370	N
F007802	Metagenome / Metatranscriptome	344	Y
F012782	Metagenome / Metatranscriptome	277	Y
F015222	Metagenome / Metatranscriptome	256	Y
F023876	Metagenome	208	Y
F031129	Metagenome	183	Y
F031260	Metagenome / Metatranscriptome	183	Y
F043344	Metagenome / Metatranscriptome	156	Y
F053568	Metagenome / Metatranscriptome	141	N
F070214	Metagenome	123	Y
F081756	Metagenome / Metatranscriptome	114	Y
F082810	Metagenome	113	Y
F085809	Metagenome	111	Y
F101856	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI24517J20059_1002853	All Organisms → cellular organisms → Bacteria	2657
JGI24517J20059_1003521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2075
JGI24517J20059_1004224	All Organisms → cellular organisms → Bacteria	1693
JGI24517J20059_1004393	All Organisms → cellular organisms → Bacteria	1613
JGI24517J20059_1005113	Not Available	1344
JGI24517J20059_1005831	Not Available	1163
JGI24517J20059_1006686	Not Available	1002
JGI24517J20059_1007956	Not Available	838
JGI24517J20059_1008748	Not Available	770
JGI24517J20059_1009032	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	749
JGI24517J20059_1009192	All Organisms → cellular organisms → Bacteria	737
JGI24517J20059_1010991	Not Available	632
JGI24517J20059_1011395	Not Available	616
JGI24517J20059_1011595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	607
JGI24517J20059_1014008	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	531
JGI24517J20059_1014061	Not Available	529
JGI24517J20059_1014124	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	527
JGI24517J20059_1014301	Not Available	523
JGI24517J20059_1015287	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	500

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI24517J20059_1002853	JGI24517J20059_10028531	F082810	LPSNINPETGLTYIDDALLSNEEKAMRLRQKGMTA*
JGI24517J20059_1003521	JGI24517J20059_10035211	F007802	SQTTLAPWTITDPGGTAYMLAQYPQGWLRMGDASPVAADVAIAASEDVFQYHSQKAWYFETSIAVTDVTELNTFVGFAANAYANPNAVPDDGIGFSHLEDTTTIQFVSRKNGAGTSFTMLEAGSTYAFADSSVTTQSATAYNMPDNNVRLGFLFQPLGTETGQTAIQYKLFLNGNIVGTQAATTVPDDLLMEMKIMYESKGILTNDLYTDYVQTVQQR*
JGI24517J20059_1004224	JGI24517J20059_10042241	F012782	MTTHFSSGVTNVPGKAQATSLFSGIKQPLITGGDAQEVAYQNDFVTYNASDWDVTSSGSAYQLADYAGGWLRLGDNVPAHTETIGVSGKEVWNYNANKKWWYETRIAITDVSDYNFFVGF
JGI24517J20059_1004393	JGI24517J20059_10043932	F000567	MKESLLKLTEKITTWHVKLFEYLTLKSKTSVLFTWLLIFICLYEIFEHIVIPIFLIWWGLS*
JGI24517J20059_1005113	JGI24517J20059_10051132	F085809	MTISWNTGAAAMRFRHNLKLKKKNKKKNKSTSPQAGGPAHKESGFKPSSLTVDKL*
JGI24517J20059_1005831	JGI24517J20059_10058311	F006550	DYKGQQLWLNPVDKTVYATDGAPTYSFGEVNGTPIYNYDSHFDAVKTAKDKLGTSYYHDAFVDPEFKSLAEDYVSDVKSGGRQRQAALRSSVNSAVDIVNVWETVLGKRDRVYAGKNLAKEIAVPNLLISIDTVTKFTGLEKLDEGMRARVKELPYTRANFTAEKFGLKFIIHEEARLKNVHNVLQDSIQVASTKIEQRQSYDVINVVETNTAQAAIAAWDTFVSSTTQSTGDPTIDIGIASLNIEGTGVGGKLNRVGMHQLTYAKFTGNTFLRGVASIGPRDYSYEAGTSELVGIPGIGLVLDNGIKQGDVHCVDTELEPNCALFQGPQRVGSQHDEETGDDKYFIIDYHLAAKIQSETGRVITGAITPLAWS*
JGI24517J20059_1006686	JGI24517J20059_10066864	F070214	MRYIKLILLLMILIPTISLTEETTTNNLISQDFSTGWSGTATQRHSNSTVAAVNNTYIKSDDVSLKDDANLTEAQLQDGFTTNHSFKYWHWNNYNSTVTS
JGI24517J20059_1007956	JGI24517J20059_10079565	F031129	SKAIFDVPLSLSKTIEYLVEKEIKKVKKSKPNGQGN*
JGI24517J20059_1008748	JGI24517J20059_10087481	F004463	MNNKTIKSVNNRILKTMMADEKELKVLLNTETTSIPDQQLDGLFVKIEQLLGRLMVNQNKIMLLQSVGEEDGNRKK*
JGI24517J20059_1009032	JGI24517J20059_10090321	F053568	GQTFKIKYTKLDGEEVTRNAKFILGKCGEYISKAGNKLFTYFDVDQSNHMGGDQYRSARDSWEIK*
JGI24517J20059_1009192	JGI24517J20059_10091922	F101856	MTTNVEKRIVLASADPLSHMELELTSAIQDAYDKAVKEGFSGTITDWIKTAPIDEVKRIDLGGGGPVKNRPKEPKGVKKLNIADYFTIGRTVASLNPMEREVV
JGI24517J20059_1010991	JGI24517J20059_10109912	F015222	MQTLLRRKMTERFCKKCNKMCHCTQAGTENECTNCECNGREEDSTYEGGGVIIDDTGECESCQ*
JGI24517J20059_1011395	JGI24517J20059_10113954	F005314	MVKPIDITNRVIVPKPQPNLEKPKSFFIGRAPMDGAEEEGIEVEANPRDEIKQPHLDNSVVQD
JGI24517J20059_1011595	JGI24517J20059_10115951	F002811	YNASNWQTVTSTGASDYQLADYAFGWLRQGDGAPAAGEIQGVADYECWQYSSTRPWYFETKIALTDVGEGNIWVGFAQNGYADSDTLPTDGIGFSHLQDTTTIQFVSRKNGAGVSFDMLEAGSTYTFEDSSIATQSATVLAQPSNPVRLGFLFQPLGSETGQTAIQYKLFLNGNIVGTQAATTVPDDLEIGINAMIAHKGTV
JGI24517J20059_1014008	JGI24517J20059_10140082	F002274	MAKTEVGYPEGGKKYKGPTDNVGQDPRANIVTNAFVPGQKIDKGTKVTVQGTGAMLKSKNKTATWF*
JGI24517J20059_1014061	JGI24517J20059_10140611	F031260	MDDRIEQFDTWFVNAKSGDKYTYFTGNLAYSTCLADGLPLKQLRNHILNKCCKWDLSTLPKKASTNKILFKPQIRLVQKAKKKYWGKRVKDVLRDSDYIAVRL*
JGI24517J20059_1014124	JGI24517J20059_10141242	F043344	NMGDRVSVSFRQKNDWYVNKVKEEHTDESPALFHHWGGTQFPKMAFDWFKSVKKKYGKGGGDPFTRMEPRNLMVQLIAHLRNHADLRYSTLNTSKKESDWDIDPELICYSIYLGKDGSDGDNSDNGHYTIDVDTGKMYDDKEQSIG*
JGI24517J20059_1014301	JGI24517J20059_10143012	F001821	MQTNKKPNIALEAFDMAKTIQDVSRGGSLYGKLFAIKDMQIHLLQEENKIKEQIESEESK*VE*
JGI24517J20059_1015287	JGI24517J20059_10152871	F023876	CYEGVHKKHGYAYKRYVDLDAMEEIDNGKTQYRCASVKWTISNERTLT*
JGI24517J20059_1015287	JGI24517J20059_10152872	F081756	MIDYNLILYIGLFLMAFGFILFMISEMEDRRKDRELFHQQQLTKSFERNKQ*