Scaffold supr50_108063

Overview

Basic Information

• Taxon OID: 3300001707
• Scaffold ID: supr50_108063
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Beebe Supr50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1581
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Microbulbiferaceae → Microbulbifer → unclassified Microbulbifer → Microbulbifer sp. OS29 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Cayman Rise, Cayman Islands

Source Dataset Sampling Location

• Location Name: Beebe Vents, Mid Cayman Rise
• Coordinates
  • Lat. (^o): 18.35
  • Long. (^o): -81.85
  • Depth (m): 4000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008913	Metagenome / Metatranscriptome	326	Y
F023123	Metagenome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
supr50_1080632	F023123	N/A	MKMDRNYFKEKHTGKKSKGSHTKCCGQDKDRHILNKNKKDEWEMIERHCEDHLTHYSSVKDITPICCKVCGRLLEYRCTLDKESYYNKNTIDTK*
supr50_1080638	F008913	N/A	NGNVLWTCDNCDRTAEVSWPDTNAVALLCTCDGHVHPQCNNDWYYQGLYWNRIPMENRERYVKARRKN*