Scaffold GBIDBA_10035914

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10035914
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2618
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013467	Metagenome	271	Y
F036024	Metagenome / Metatranscriptome	171	Y
F062176	Metagenome	131	Y
F066274	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_1003591411	F036024	N/A	MSIEYSMRRIGNEDTFLKLDEATRICQAKVAAYISDVKMEDGEEAIDDYAWHVVTPERFEKDWENDEKLKKTAEIKAKYKKLAKNNRVLFFEVDWN*
GBIDBA_1003591412	F062176	GGA	MVYEVHITTINKNFTYRVKAKNVLEAEDEALKKLKKDIPIDHITAGQYSVEHIVNIKEA*
GBIDBA_100359142	F013467	GAG	MTVELLKNWAWCEKCLEYKDADEVCFIGIEEDSFGKDLLHFLCDKCDLENINNIISSPTKPKGA*
GBIDBA_100359144	F066274	N/A	MKLELTSDEIGWVKYALIRASATLNGRDKDMTLQEERTLLRIVKKIEKQDK*