Scaffold GBIDBA_10019953

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10019953
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8076
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (29.41%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025300	Metagenome	202	Y
F030785	Metagenome / Metatranscriptome	184	Y
F041248	Metagenome / Metatranscriptome	160	Y
F065850	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_1001995310	F065850	N/A	MKIKSKKQFWWRLNHLKRNGGEITVTDRTPEMNVREFNRIELLVNKRVRWEIGSEGMAIK
GBIDBA_100199533	F041248	N/A	MKQHWKRARQEGAIKRTKESILVYEEKLKSCEDDTEKKLLKKKIERAQTTISNTKII*
GBIDBA_100199534	F030785	N/A	MRTATIEILEKDEKVLGSRTSGEYMVRRFEDGIEMGGEFHYTMAEAGAAIRNWENQTEK*
GBIDBA_100199535	F025300	N/A	MKKINVETLVPDTFKFLARDMDGKLYAFENEPSIATDIACDNWDVKEGKFLQITDPVFLSEEGITHTGVDSELGDWRDSLIEL*