Scaffold GBIDBA_10009367

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10009367
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7495
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (94.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019030	Metagenome	232	Y
F075317	Metagenome	119	Y
F081754	Metagenome / Metatranscriptome	114	N
F096074	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_1000936712	F081754	GGA	MAGRKATTQYGNPVTVLSWHLLPNGWEVWQLEDADQDGIFYGYVEGDESEFGLSSLLELDIAHAMTVQGKQLEELEPPIGWEWEKEISEFEQFALAIE*
GBIDBA_100093673	F075317	GGA	MRVSNLIFDAKMKNNAWLGHRVQMPKTDAQRYISSTKAAADFVAEFGDVEIVLDEKYGHYAVPEFAEGRAEYSKLKQAYCNQYGSN*
GBIDBA_100093678	F019030	GGAG	MTDKHIDNRKTYAIQKSTLEAVGIELVIASKEYEKQLGAGLDEADRVFYREQIKYLGGLINHLHEVTKNELLLI*
GBIDBA_100093679	F096074	N/A	MAKFSLSEGKEMEAKKILGINSTVMNGIEKTTVTKITSKGITLTGKKGEQSLTFPLKDAEAALKAGRWKVVDND*