Scaffold GBIDBA_10002818

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10002818
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15413
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (61.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007138	Metagenome	357	Y
F055198	Metagenome / Metatranscriptome	139	Y
F061914	Metagenome / Metatranscriptome	131	N
F101852	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_1000281823	F061914	AGGAG	MNTLKSILSTIVFFGGIVFAQEEVQEEAVESVNSWSGEFSTDITLGDTVSFTTPYTGISYSGEGWKLTSQLSEGGVNVEEAYYNVDAKVTSVTLGQQRVPFGLSNHWHRPSGNPFVSEPSSQAYAVGLGASTEYAGVGIAGFYGNDQSYSVRTSYELVGHTAGVSINSDEARLLDASGTFSYESLGSIASYFEYDLSEETSGDLWYRAVISPSFTKGITALVGYSSMGDETKTMYGVGYHYGNSNISSELSADGDVSVRVSYTF*
GBIDBA_1000281831	F101852	GAGG	MSEQELTKRQKGMIETHKKRMYHLRVNGLDWQATHQRRWEENSPCWEDKCNCKFVKGT*
GBIDBA_1000281833	F055198	AGAAG	MTNFEETSCKVLGVILFIIICLLVVQLNGCTCYDVPPPIELEYIDEVKMENYA*
GBIDBA_1000281835	F007138	GAGG	MIDKTIKLTGEYPSDFKPDMIVEGIQQYFESHGLYDARMLSGTKWGYQERHPEDLIIFNANVLMKDMGKVWYGDLNLTQDYMLLKSIADSLDTTLYILWESDGRFGEENKPIDELIKKAVWNTDELKPTKEWYKNKMDKKYNGGK*