Scaffold SAHD_10002991

Basic Information
Taxon OID	3300001682 Open in IMG/M
Scaffold ID	SAHD_10002991 Open in IMG/M
Source Dataset Name	Cattle waste upflow reactor
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300001682 Open in IMG/M

Scaffold ID

SAHD_10002991 Open in IMG/M

Source Dataset Name

Cattle waste upflow reactor

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32326
Total Scaffold Genes	57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	46 (80.70%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

32326

Total Scaffold Genes

57 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

46 (80.70%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Engineered → Wastewater → Nutrient Removal → Dissolved Organics (Anaerobic) → Activated Sludge → Activated Sludge → Activated Sludge Microbial Communities From The University Of Illinois, Usa, From Bioreactors Seeded With Cattle Waste

Source Dataset Ecosystem

Engineered → Wastewater → Nutrient Removal → Dissolved Organics (Anaerobic) → Activated Sludge → Activated Sludge → Activated Sludge Microbial Communities From The University Of Illinois, Usa, From Bioreactors Seeded With Cattle Waste

Source Dataset Sampling Location
Location Name	USA: University of Illionis
Coordinates	Lat. (^o)	40.103885	Long. (^o)	-88.225087	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: University of Illionis

Coordinates

Lat. (^o)

40.103885

Long. (^o)

-88.225087

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F051061	Metagenome / Metatranscriptome	144	N
F059692	Metagenome / Metatranscriptome	133	N
F071725	Metagenome	122	N
F076577	Metagenome	118	N
F093482	Metagenome	106	N
F099347	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
SAHD_1000299111	F093482	AGGAGG	VEERTLDELWERIEKEDPVLWAQMDRFYGPMSKKILLMEWNRVKHKCKKDWRFEKLIDDWLIQSRLRKHGGKCLFEHKKRSRA*
SAHD_1000299116	F059692	GGA	MDKETEQLILKKLQIDYLSLHAIKSDIEKIISALVVDLDPRVNEIQEIQDQIKGYLSEP*
SAHD_1000299118	F099347	AGG	MNLAEFIENFEAFITYIEEAWEQKDLEILKAIVSDCEDFINAYGHQFKCYSQTAKEWKESYKKNREKRKEIAKGICEWCGRKKGTNCHHLAKRGRLVLYNDVRLLRILCINCHRLFH*
SAHD_1000299136	F051061	AGGAGG	MSFLDKLKEKAKQRERKSLYLPELDETVYWYPMTAGERQRILNAAGFKWARDAVQMDNSKYKASLIIEKLEDKDGKKIFSNTPEHKDLLINKIDDEILTRIVSAIDPSKTEEQQIEEAKNG*
SAHD_100029918	F076577	AGGAGG	MFWPENKVISLMEIVFHFGAINYELNNGKKIREMWKEFKENCIDKRLKYINPDPRCTHPVNLDVLDHCWGYAEKIDKGEEIDMNELCEGCEFFREEVKNENPTQ*
SAHD_100029919	F071725	AGGAGG	MKTLLNKPESEYLNLGSLDQELSWVLKIYSSGKINDLIYDGLLLFAHDEEIKAIREKWERKEINKVGLFHELEKLSKVESLPG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters