NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Draft_10437660

Scaffold Draft_10437660


Overview

Basic Information
Taxon OID3300001605 Open in IMG/M
Scaffold IDDraft_10437660 Open in IMG/M
Source Dataset NameTailings pond microbial communities from Northern Alberta - Syncrude Mildred Lake Settling Basin
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMcGill University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)689
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location
Location NameFort McMurray in northeastern Alberta, Canada
CoordinatesLat. (o)57.01116Long. (o)-111.6Alt. (m)Depth (m)0 to .1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062685Metagenome130N

Sequences

Protein IDFamilyRBSSequence
Draft_104376601F062685N/AADLWKIKHGKRDALGMIYRGIFEPICYVVGKVKGGK*

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