Scaffold EMG_10030890

Overview

Basic Information

• Taxon OID: 3300001598
• Scaffold ID: EMG_10030890
• Source Dataset Name: Elephant fecal microbiome from Asian Elephant in Hamburg Zoo, Germany
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5734
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Asian Elephant Fecal → Asian Elephant Fecal Microbial Communities From Hamburg Zoo, Germany

Source Dataset Sampling Location

• Location Name: Hagenbeck zoo/Hamburg, Germany
• Coordinates
  • Lat. (^o): 53.595256
  • Long. (^o): 9.941572

Associated Families

Family	Category	Number of Sequences	3D Structure?
F096172	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
EMG_100308902	F096172	GGAG	MKTNSKASLNNLQLSDVYSLMLFIMYKVQDIPEYAVLSELCYLLDGNNLTRLFTYFAGRTITIPTEDEFKTLTNALLMYQYINIDNLSFTDAQAKLTGVSNKQKDEITTLYLKILPIINNYNIDRSLIQKHAR*