3300001598: Elephant fecal microbiome from Asian Elephant in Hamburg Zoo, Germany

Overview

Basic Information

• IMG/M Taxon OID: 3300001598
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095566 | Gp0055761 | Ga0012990
• Sample Name: Elephant fecal microbiome from Asian Elephant in Hamburg Zoo, Germany
• Sequencing Status: Permanent Draft
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 929519943
• Sequencing Scaffolds: 16
• Novel Protein Genes: 16
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → cellular organisms → Bacteria	5
Not Available	5
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctDOT22	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp.	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Asian Elephant Fecal Microbial Communities From Hamburg Zoo, Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Asian Elephant Fecal → Asian Elephant Fecal Microbial Communities From Hamburg Zoo, Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Hagenbeck zoo/Hamburg, Germany
• Coordinates
  • Lat. (^o): 53.595256
  • Long. (^o): 9.941572
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036964	Metagenome / Metatranscriptome	169	Y
F042737	Metagenome / Metatranscriptome	157	Y
F051210	Metagenome / Metatranscriptome	144	Y
F066905	Metagenome	126	Y
F071326	Metagenome / Metatranscriptome	122	Y
F072445	Metagenome / Metatranscriptome	121	Y
F090962	Metagenome / Metatranscriptome	108	Y
F096172	Metagenome / Metatranscriptome	105	Y
F098178	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
EMG_10000089	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	126454
EMG_10000222	All Organisms → cellular organisms → Bacteria	90517
EMG_10000284	All Organisms → cellular organisms → Bacteria	83126
EMG_10000454	Not Available	70460
EMG_10004567	Not Available	23036
EMG_10006394	All Organisms → cellular organisms → Bacteria	18582
EMG_10011187	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctDOT22	12697
EMG_10025850	All Organisms → cellular organisms → Bacteria	6623
EMG_10026481	Not Available	6502
EMG_10028416	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses	6136
EMG_10030890	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	5734
EMG_10057460	All Organisms → cellular organisms → Bacteria	3464
EMG_10167256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp.	1453
EMG_10179796	Not Available	1367
EMG_10180678	All Organisms → Viruses → Predicted Viral	1362
EMG_10186559	Not Available	1325

Sequences

Scaffold ID	Protein ID	Family	Sequence
EMG_10000089	EMG_1000008978	F042737	MAKLTEKSTEVFEYVKNAGGKVSIPELCEALNRPSRSVGANVTDLTKKKIAERQKEKNGEEEVTYVVLTPDWEAAFDALEDK*
EMG_10000222	EMG_1000022216	F066905	MPDERACGCGCNNGGILGGCGGNDCSILFFIIIFLLLFTNCGCGCGCGR*
EMG_10000284	EMG_100002843	F090962	MDVISTSLSKFGAFCTDWVSYFFNTNQFWSTIIAIVIVLWLISFLIILPLHRLSLRKAEQAKKDLTVSVDEIIYLLSKAQYSLSEQQTLQYDPCFALMKTMFES*HFEYIDNLNTIKENVQKVEVLLHQRVISDEQRNNIENQRKSLRNHLNWSHIL*YELNIVTL*IYNLFW*
EMG_10000454	EMG_1000045415	F096172	MKNRIKENINNLHLSDIYSLMLFALYKMQDIPEYAVLSELCYLLDGNNLTRLLTYFAGKTVTFPTESEFVELANALLLYQYINIEGQSLTDAQLKLSGTASQKEAATQAYLKLLPILGEYNIDRGQIQHGN*
EMG_10004567	EMG_100045674	F096172	MKSSIKKNLNNLHLSDIYSLMLFVMYKMQDIPDYAVLSELCFLLDGSNLTRLLTYFAGRTITFPKEEDFAIVSNALLLYQYINIDGKSLTEAQGKLTDLTAKQKDEVTELYIKLLPIMRQYNIDRGQIQKNDRY*
EMG_10006394	EMG_1000639411	F098178	MKKYYILKLDSYEGDGSCLSVSADGSDAMFVVLLVDGASADIVDLGYSSVEALVQAWSNVQFENLGEFS*
EMG_10011187	EMG_1001118713	F071326	MEGDGGMVSKLNEKAQQFYKLALQTIKVQLKLNGTKFIVKRPKDNSKWKNVFGGSYSSDETLENDYEPEFSTVLIVNTGEMRDVWNRNRDTLESYTNDGSLNIGDELQYNRGDRVYRFKITQKYGFSELSDSLFIYTLMSIIETYQ*
EMG_10025850	EMG_100258507	F072445	MAVVSDLVRGGDGYMKFIDYEKTYRDDNKEFLRGDMWQFSFTSAPKIVYYPGDTIMNARLNSVNVSLDSSVNGFEKRMRGNFVIKQQTGQQTSGNLTLSFIDKEDQAISYFVDDWKQKVADRDTKYSFRKDDLVADCQLVLTNSSRISVRTLNFYNCVIQDAPLDENGVAEDGTDRADVQLSLFFEHYSRSFDNL*
EMG_10026481	EMG_100264811	F072445	MAVVSDLVRGGDGYMKFIDYEKTYRDDNKEFLRGDMWQFSFTSAPKIVYYPGDTIMNARLNSVNVSLDSSVNGFEKRMRGNFVIKQQTGQQTSGNLTLSFIDKEDQAISYFVDDWKQKVADRDTKYSFRKDDLVADCQLVLTNSSRISVRTLDFYNCIIQDAPLDENGVAEDGTDRADVQLSLFFEHYTRSFNNL*
EMG_10028416	EMG_100284163	F072445	MASVASLVSSNGLQMDFINYDNYKENNKEFLRGDLWELKVTAPPKIVYYPGDDIFNKRLQSVQVGLDYSVIGIEKQMRGNYAIYQQADQSTYGTLTLTFTDREDQAITYFAQDWRNKVADPDCKYSFRKDDLVMDCELHITNSSRIDVRVLKFFNCQITDAQYDESGAPQAGVDRADVTIGLRFEHYSRSFENI*
EMG_10030890	EMG_100308902	F096172	MKTNSKASLNNLQLSDVYSLMLFIMYKVQDIPEYAVLSELCYLLDGNNLTRLFTYFAGRTITIPTEDEFKTLTNALLMYQYINIDNLSFTDAQAKLTGVSNKQKDEITTLYLKILPIINNYNIDRSLIQKHAR*
EMG_10057460	EMG_100574606	F098178	MKKYYILKLESYEDENSSLFVSADGGDAMYVVLLVEGSSAEIVDSGYSNVSDLTEAWSDKQFENAGDYL*
EMG_10167256	EMG_101672563	F036964	MINMLNIIFPSLMVAGAFGSLVTNLISKGEFPISLQWFGAMLLYTALLMRNLAK*
EMG_10179796	EMG_101797964	F096172	MKNNLKPSLDGLHLSDIYSLMLFILYKIEDIPEYATLSEICYLLDGNNITRLLTYFAGKTIKIPTEEEFVTLVNALLLYQKVNIDGETFADARNKLSNVTAKQRDAITDLYIKILPIINNYNIDRSQLKKYER*
EMG_10180678	EMG_101806781	F051210	ANIRSREYAKMFSRNEEMKDLFGNPSNSNLQQKLFSGYAETPLLSTQYFNASVASYVSSFAGYMSIEKDFDQPNGLFYWFDVLGVTDMRTIIPNLGADQYQDINTMGGFSMNVEVAAKTAFSALVGRKIIPGTVRVKIAQKVSGAIVKFELVDDGQSNFMAVAGKITAGTINYLNGRVDFTLSSAMAADAAESIVIVGKEDVTGTPCNTTGASKEHANDKRFLAKMQQVGLSTVPDMLVAEYNIAALGAMKKATGSDMATFLFTKLRELYTKCINYKLVSTLEEGYAGNTMDTLDLSTATMKTEFYDYRSRVDLFDAYLVNVEAALATKAVKGVTTTAYVAGNNAATQFQKAGVIGKWEKNTKMTYINDLLGWYDGIPVLRSTDISEAAGHGVFYAIHKTADGQMAPLARGIYMPLTDTPTIGNYNNPTQMASGIYYQEGTKYLAPELVQRVDF
EMG_10186559	EMG_101865592	F071326	MAEDMASKSLEKANKLYSIGMKNIKVQMALLGTDFVVLRPKDNSKWKNVFGGSYSSDSTLENDYEQFSTRLIINQNEFRDVWNRNRDTLESYTPDGNLKVGDELQYTRNKRTFRFKITMKQGFSETADVLYIYTLSSIIETLTE*