Scaffold EMG_10000284

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold EMG_10000284

Scaffold EMG_10000284

Overview

Basic Information
Taxon OID	3300001598 Open in IMG/M
Scaffold ID	EMG_10000284 Open in IMG/M
Source Dataset Name	Elephant fecal microbiome from Asian Elephant in Hamburg Zoo, Germany
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	83126
Total Scaffold Genes	78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (11.54%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Asian Elephant Fecal → Asian Elephant Fecal Microbial Communities From Hamburg Zoo, Germany

Source Dataset Sampling Location
Location Name	Hagenbeck zoo/Hamburg, Germany
Coordinates	Lat. (^o)	53.595256	Long. (^o)	9.941572	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F090962	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
EMG_100002843	F090962	N/A	MDVISTSLSKFGAFCTDWVSYFFNTNQFWSTIIAIVIVLWLISFLIILPLHRLSLRKAEQAKKDLTVSVDEIIYLLSKAQYSLSEQQTLQYDPCFALMKTMFESHFEYIDNLNTIKENVQKVEVLLHQRVISDEQRNNIENQRKSLRNHLNWSHILYELNIVTLIYNLFW

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