Scaffold JGI24005J15628_10072696

Overview

Basic Information

• Taxon OID: 3300001589
• Scaffold ID: JGI24005J15628_10072696
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1237
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046006	Metagenome	152	N
F053545	Metagenome	141	Y
F090883	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24005J15628_100726961	F053545	N/A	EADCPMCEEVITHMGMRITVHNGYVMLPIEDTRKNIEGGRESKIKWSGETLPEVGKE*
JGI24005J15628_100726962	F090883	GGAGG	MVSIADRMKRINNCRDMMSKATCPRMRXMWKKNYEKLLKNYWEEEGERILNAAGQVH*
JGI24005J15628_100726963	F046006	GGAGG	VKEFLTPLGKYTNFVLLLXILHFCITVMVVNFRYIDRLNNTIDTMWHEIEQVKETNISLYQFIEEHGNDITGR*