NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI11757J15750_1007941

Scaffold JGI11757J15750_1007941


Overview

Basic Information
Taxon OID3300001581 Open in IMG/M
Scaffold IDJGI11757J15750_1007941 Open in IMG/M
Source Dataset NameMarine microbial communities from the Deep Atlantic Ocean - MP0759
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)889
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameWest of Cape Town, South Africa, South Atlantic Ocean
CoordinatesLat. (o)-32.81Long. (o)12.77Alt. (m)Depth (m)3901.64
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082562Metagenome113N

Sequences

Protein IDFamilyRBSSequence
JGI11757J15750_10079412F082562N/AMNNIILMKTIILGILITLSTNLFAQTNDSLRNYFLDIELSIIHPLLGGFGGTIGIERNHSSFGVMGFGTKLNHMMKHYFIEDAEELAVYNWGVELYSDYYIKQNHRGLFIGSLVSINGFRFTDIPNPQTILVLYAVPRVGYRICLPKKLNAFYFQPSLTAHIKFWDNQEQFLYREIDTKSIFLLSQLTLGMKI*

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