Scaffold MLSed_10002036

Overview

Basic Information

• Taxon OID: 3300001533
• Scaffold ID: MLSed_10002036
• Source Dataset Name: Benthic freshwater microbial communities from British Columbia, Canada
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30357
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (20.83%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Benthic → Benthic Freshwater Sediment Microbial Communities From British Columbia, Canada

Source Dataset Sampling Location

• Location Name: British Columbia, Canada
• Coordinates
  • Lat. (^o): 49.283333
  • Long. (^o): -119.583333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002778	Metagenome / Metatranscriptome	530	N
F004839	Metagenome / Metatranscriptome	421	N
F006590	Metagenome / Metatranscriptome	369	N
F010541	Metagenome / Metatranscriptome	302	Y
F012574	Metagenome / Metatranscriptome	279	Y
F025030	Metagenome / Metatranscriptome	203	Y
F033801	Metagenome	176	Y
F035767	Metagenome / Metatranscriptome	171	N
F087195	Metagenome / Metatranscriptome	110	Y
F093872	Metagenome / Metatranscriptome	106	N
F103247	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
MLSed_100020361	F093872	AGG	LNVSRIKTFTPGEIGEPMFKLDAGEQRIYNRIREHLHIHKAGKQVDEIYLSIAARAIGHLLHNAEILSKDGAVMIHPNGARQVSAEWTAFKQGFELFLELSRTLGLDPKSRLTLEYFQDGTGEEEDEIAKLLKMN*
MLSed_1000203612	F035767	N/A	MGYLSAKQINHLKELQKSNYAGRRSFQGISLRVVGLADAVIEFAELMEQCTVKERSRVIDSATPIALQVYKSLVPVSSKSHRISTNPFGNKKMQGWAESDGASMIVQPGNLRKSIIDLSKNLKSYRYAVGAIGPLYKRNTMNKGINSSEGTNGFYAHMVFGSTRAWYNKIVIQARNLSREKVIKTMRNECIFIMQERPKKFWQIS*
MLSed_1000203614	F025030	N/A	MKLRLLKEWNGKEPGKVGVFLSEYGEQMIKDGIAELLDEDYVVEQMPVKEEPQQDPVYIPIPVPMSYFNDETNDNKITKPKNK*
MLSed_1000203616	F006590	N/A	MKTIKIANADIPIKFGMFVLGTFLRERKLKLSDLSLLGEDLLLALELAFAGVQQGYKAKGEKCPYDLQSFCDLVDTDMGGIARIMEMISNEISPPEDESQKNVLAKAESSHLNTSSDFVSEF*
MLSed_1000203620	F103247	N/A	MPYTEKTVLFRGLDFDSGRTPNHSAGGVAGTGSITPTNSQPNTQNSSVTKVFKQSFLDSYTAILTVTKNAGVLPSNLEQLLIFQNGQELLSSQFTVTGSVITIDSSTHYDGSNYVIFFIIV*
MLSed_1000203628	F004839	N/A	MEKNFTNTQFKWTFESISDNIPTIMLITILLTYGINAYLTAIFLPLDFWLAIIAASILQLGRFAVVFMDFLNPTKGRSTYPPKIALGATIVALIEIFFGLQEHYEGGEYITMFLFVGTIIVFGYLLEINFVDKGVEAYGINEPKIIKRRRRKIIVKNANEEVPKAFRRNITGIQMSMF*
MLSed_1000203632	F010541	N/A	MEKQIFTVMYFGNAKIYQDLCEEVAAYSKRHAVEQVYSKLRNEDYFPEDMFSWGGLVNDCDGNVIAEVGSESIEYDGGYFYAEQLTTV*
MLSed_1000203634	F033801	N/A	MVLMKYEIKWKLGKVITEAPTVEEAIKKFKEMRIEVPDKEITISKFGK*
MLSed_100020364	F012574	GGA	MTKQDYAKQVRQINSIDGYFNRFYELSGECRTHQEAWIKLEEERDTFGLDEKYKTYDSFRKAKSLYMVIRFV*
MLSed_1000203641	F002778	N/A	MKEYNSKMLEIKAFCEEVNAWISTAPSAEMLDECDEYLRQLSAYYSRYTVISGMNESIYSYLMMTCIRDMPEDEYKRVKHSSTLTDFYVKGKYPKATAIFEQCRAVQRLLLVTSDNYRTLLSSFRQERILVGHMTT*
MLSed_1000203647	F087195	N/A	MTPEERQKAISEAFYSIAIYAMVTHTHSRDGLHRLEHMMKIIDEIPVVNDTQHNNFSHRFYRGILEDAIKMNKEFNESFTKP*