Scaffold rank12_10497501

Overview

Basic Information

• Taxon OID: 3300001484
• Scaffold ID: rank12_10497501
• Source Dataset Name: Sheep rumen microbial communities from New Zealand - Rank12_low
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 550
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen → Sheep Rumen Microbial Communities From New Zealand From High And Low Methane Emitting Sheep

Source Dataset Sampling Location

• Location Name: Palmerston North, New Zealand
• Coordinates
  • Lat. (^o): -40.352
  • Long. (^o): 175.608

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072829	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
rank12_104975012	F072829	GGAGG	MENFYNQLIDEYFKRHPDAGLAWWMLPLNEQPEGFKQEMYDIMWDLTHKEEANG*