Scaffold JGI24021J15306_10037970

Overview

Basic Information

• Taxon OID: 3300001463
• Scaffold ID: JGI24021J15306_10037970
• Source Dataset Name: Ecteinascidia turbinata endosymbiont from Florida, USA - Sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5339
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Sampling Location

• Location Name: Key West, Florida, United States
• Coordinates
  • Lat. (^o): 24.5512
  • Long. (^o): -81.8083
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F096190	Metagenome	105	Y
F106073	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24021J15306_1003797014	F096190	GGA	MKRVCTPVAAHRSRLSKGVIDIVSWLSQSTDIFIKFKEVNLQLQGSDVNLIKAKSAIFTFLSKFNAVQTKSSPS
JGI24021J15306_100379703	F106073	N/A	MKEKSIWSGIIQQPVNAHAGSRRIDVKTARPGVDYSSH*