NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24021J15306_10037970

Scaffold JGI24021J15306_10037970


Overview

Basic Information
Taxon OID3300001463 Open in IMG/M
Scaffold IDJGI24021J15306_10037970 Open in IMG/M
Source Dataset NameEcteinascidia turbinata endosymbiont from Florida, USA - Sample 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5339
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Sampling Location
Location NameKey West, Florida, United States
CoordinatesLat. (o)24.5512Long. (o)-81.8083Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F096190Metagenome105Y
F106073Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
JGI24021J15306_1003797014F096190GGAMKRVCTPVAAHRSRLSKGVIDIVSWLSQSTDIFIKFKEVNLQLQGSDVNLIKAKSAIFTFLSKFNAVQTKSSPS
JGI24021J15306_100379703F106073N/AMKEKSIWSGIIQQPVNAHAGSRRIDVKTARPGVDYSSH*

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