Scaffold JGI24003J15210_10012305

Overview

Basic Information

• Taxon OID: 3300001460
• Scaffold ID: JGI24003J15210_10012305
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3420
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020603	Metagenome	223	Y
F067117	Metagenome	126	N
F080239	Metagenome	115	N
F092711	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24003J15210_1001230511	F067117	N/A	MNTKSKEKMKMLQIPVTEKQFDILKDKADKEKRSLPNSILIILEPHMKVK*
JGI24003J15210_1001230512	F080239	N/A	MNIKKMKMEQILNKFYSLKYLLESKSNIVYKKISGVINPPILDRWNWIVVIPQQFNRYANPCALLTVLVPPISIIKNYLLLIKNNIKKSLIIKKEKYEHQK*
JGI24003J15210_100123056	F020603	AGGAG	MINRLLLIIFCSLLVANCSSYKPLINPESSKDKHNGDVIAGNYWKDLQACRYIHSQNTGTIIKTLRISDETVFVKKCMEDYGYSILR*
JGI24003J15210_100123057	F092711	GGAG	MVQLEVTLTGRSKSFTADTLQDCAKQFFDEYGEASEEVVKCQTFEVNNPAEFLIVGGNESCIGYLKQMQQGAINDK*