Scaffold JGI24003J15210_10002755

Overview

Basic Information

• Taxon OID: 3300001460
• Scaffold ID: JGI24003J15210_10002755
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7689
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005620	Metagenome	395	Y
F014071	Metagenome / Metatranscriptome	266	Y
F084852	Metagenome	112	Y
F092870	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24003J15210_1000275513	F084852	GAGG	MRDLKRFEEDIQNILDKFQFEGAIRRKIFSQLMEYASEQDKFNAEQQAGNPKKGNQNDNDR*
JGI24003J15210_1000275514	F014071	AGGAG	MATRPGRLLDKTFTSFTEASGRLEDTIGWVTAAEELAHEVQPGCKAEVTLHLLGKVLEKARTELDQASEDLATEVFGK*
JGI24003J15210_1000275516	F005620	AGGAG	MTDTKHIDNFKLFCKNNRLRLKEAGDFLPIAKAIGKFADDHFFCNFKQGTIGVYVTRESQRQFTYLNKKLIKLGCVPTQLGDFEACYDLEWMNIPPVAKLLKIKKGAAKVKDPTWLKQ*
JGI24003J15210_100027554	F092870	AGGAG	MTEEYLTYLYAFTQSLVFFIYYPHLMSIWKSPRAEAINVPAQFTFFCIGAISGLYMYVVNGDHLATMVICGHIFIGNLASAVMAFYKQRKGKEDDRTEEDKAPQG*