Scaffold JGI24003J15210_10000458

Overview

Basic Information

• Taxon OID: 3300001460
• Scaffold ID: JGI24003J15210_10000458
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17400
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (30.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006848	Metagenome / Metatranscriptome	363	N
F007366	Metagenome	352	N
F011489	Metagenome	290	N
F013089	Metagenome	274	N
F022880	Metagenome	212	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24003J15210_1000045810	F011489	AGAAGG	MNSGSRKGWNSFLTKHYLKLVRIARRWTDSPSDLVHHTYLRCLDKRFPDGDSENPLGYFVKAMYTEATRGKFKDLYHVTDADPKEQAFESDWTKAIQREQMQLILDRLSWFDRTIFSLYLQGWNMADVSRRSRIGESTLYRSLHITRKILKDVLRNGTKED*
JGI24003J15210_1000045816	F013089	N/A	MKTRNSTALSLNSKNPFAKRERNKSLKPKKMGQSKIKTIQPNGTYDSQNGMMYKFEIELESGDSGEVSAKSEDRWSIGDEVEFEVTPSKWGDKMKLMKPGFTPNQSRGSNPDIQKRIDASWAIGHAINQESDPEKVLEAAEFLLSIRATLISKL*
JGI24003J15210_100004582	F006848	N/A	MMELKLPHRWSDLSLGELQVMMTADNPLEKISICSGYSVEKLRAMPQKLIEAASAHLDNLLTQETARHEKVVEMDGKRFGFIPSWDEFTAGEWIDMENHLEDFWANAHKITALLYREVTYELGDKYEIKKYTAKEDASIFEEMPADLVSGMLLFFWTSRNQLLHDMQFSLLEVADKAIQSAKNGDGITSSIPSQEKTFSKWTRLQNSLFKSSSNTSAI*
JGI24003J15210_1000045820	F007366	N/A	MRGTPLKETKLGKWFKTKAPKVFDLIGEIVPGADALKAIGALIDNTDTSDEEKTKAKLLMEEIASADRANARNREIEITKTLGQRDWMQVFVGSAAMIIGIVMVVWAKTGVQDKEIFFHILGFAEGTLVGQVVNYYFGAAKK*
JGI24003J15210_100004589	F022880	N/A	MFFVTAQKRTDRLYICKGCEHFVDKTKSCGDLVTEAFTDSELCGCHMPTKTRLKVASCPLGKWEAEIKQADLEAIKTFLKTENQFRTNGQLAQLYSKVTGTNTQASQCSSCNRRMLAELQKLVNETE*