Scaffold JGI24003J15210_10000035

Overview

Basic Information

• Taxon OID: 3300001460
• Scaffold ID: JGI24003J15210_10000035
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50625
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (22.58%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004850	Metagenome / Metatranscriptome	421	Y
F005351	Metagenome / Metatranscriptome	403	Y
F033810	Metagenome / Metatranscriptome	176	N
F051932	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24003J15210_1000003511	F004850	N/A	MNYEFEIYYGEIEEPLYLTNDKNYICEEMYDFMQDELGIVMNEVIYKVEAI*
JGI24003J15210_1000003512	F005351	N/A	MYNPNSPSNWSWSKAFKEMEKTINKAELEQQIVNHQHNYDGGVKKFTELSKNKQNNHYEILSQIL*
JGI24003J15210_100000352	F051932	N/A	MMDLEKEYGTITKIRWLQINELAIKYPNNQEFGAEVRKLINKNTN*
JGI24003J15210_100000355	F033810	GAG	MSSKQIHWNPDTIDHFIFISNYADVDQVLTQVENFVSIDCELQGDDTEKDLVEDLMNKIYERRYE*