Scaffold JGI24006J15134_10121176

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10121176
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 902
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005105	Metagenome / Metatranscriptome	412	Y
F012166	Metagenome	283	Y
F057760	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_101211763	F005105	N/A	MARKICDRCMGNGYRRIWKDQTESEKITIQCTKCESAGEIXEEPNYDXNGFGTDKLQ*
JGI24006J15134_101211764	F012166	GAG	MADLINSGIFLERKLTPEEKLWKAVLSQGVYEACSKKYNALPLTYGEMRSALEWISLSNKDFCVVCQFAGYDPTYILRKAKDKVNKWLPNGA*
JGI24006J15134_101211765	F057760	N/A	LQTKIAPDVKLSRSQVVKTLVNEKARKLNGRLNK*