Scaffold JGI24006J15134_10040681

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10040681
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1969
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006867	Metagenome / Metatranscriptome	363	Y
F022282	Metagenome	215	Y
F062169	Metagenome / Metatranscriptome	131	N
F105878	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100406812	F105878	AGCAGG	VKVGQIIKITPQGLKNFAPGIRKKLDGELGLVVQEKYDLSYKLDKDKLPEHIKIYPALVKFESLQSMNFLDMGSVMVFPDQAEIIN*
JGI24006J15134_100406813	F006867	AGGAG	MLYGKELAKSIQKRCKIQPGMLVKSTAGTTVNKVALVVGLSPACRFDRDYEGAEDHIFYKCQPFDGTPDFADYVTNMEQVS*
JGI24006J15134_100406815	F062169	AGGAG	MSVQDHIENILNAEGQGALDAWYVAIHEHPQNAMDIHDEVVDHLVANTFMY*
JGI24006J15134_100406816	F022282	AGAAG	MSYHFRYNIGDLVEFLAGRQTEEYIDHERKIGIIIEQRYVFTADNKFKVRTPDKDYWIRADHLTLLSSGSK*