Scaffold JGI24006J15134_10022081

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10022081
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2910
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000126	Metagenome / Metatranscriptome	2021	Y
F001802	Metagenome / Metatranscriptome	632	Y
F025154	Metagenome	203	Y
F098227	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100220812	F025154	N/A	MSPWDMVAELGIYTEEQIDEMLLCECEEILRQEEE*
JGI24006J15134_100220813	F001802	N/A	MQTIKKLKNDYLQLGNLIYKPYTVCSLPANFGCIEFNEKEGVSEWFNYKGYTYLFEKMAKS*
JGI24006J15134_100220818	F000126	N/A	MAQQSINMRDYSITRNKGEMYHAKVTDSYGNNYDNYFESASKANDWIYYVWSKEEWFNSVNSQELLYNAILQCKEIDKNNKNLRTIL*
JGI24006J15134_100220819	F098227	N/A	MYEAIEHYKVYKQKQIAKAEMDKLINKLITKNGTTKY*