Scaffold JGI24006J15134

Basic Information
Taxon OID	3300001450 Open in IMG/M
Scaffold ID	JGI24006J15134_10014014 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-53
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300001450 Open in IMG/M

Scaffold ID

JGI24006J15134_10014014 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-53

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3837
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (86.67%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

3837

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (86.67%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.5666	Long. (^o)	-138.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

49.5666

Long. (^o)

-138.6666

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F006867	Metagenome / Metatranscriptome	363	Y
F021674	Metagenome	218	Y
F022282	Metagenome	215	Y
F022555	Metagenome	214	Y
F062169	Metagenome / Metatranscriptome	131	N
F105878	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_1001401410	F006383	GGAGG	MHDKMWAVQQPGTLLRGRSSHQYGKLALVLEEAYDGPMPSNGYPPRRYVKMQWVATGERFEEMLNNAHNCFDIVE*
JGI24006J15134_1001401412	F022555	AGAAG	VSIAPKFKPGQLVKYDHPANPLLGLVMSTQFSRRRGDPVFVLVQWCGKFRNEEEYIPQAELKLVEDV*
JGI24006J15134_100140142	F022282	GGA	VDPRFRYQLGDLVEFKRTARVTEEYIDVEKLTGIVIEQRWVFTADNKFKVRTPDKDYWIRADHLTLLSSGNKNKT*
JGI24006J15134_100140143	F062169	GGAG	MSVQDHIENILNAEGQGALDAWYVAINEHPQNAMEIHDVVVDHLVENTFLY*
JGI24006J15134_100140145	F006867	GGAGG	VLHGKELVKSIRKRCKIQPGMLVNSTAGTEVSRVALVLGLSPACEFDRDYEGAEEHIFYVCQPFDGTPDFVDYACNMEKFS*
JGI24006J15134_100140146	F105878	GGA	VKAGQIIKLTPQGLKNFPPGIRQRLEGQIGLVVQQKYDLSYKIDQSKLPEHIKVYPSLVRFDSLDDLSGIYDNAVMVFPDQVEILS*
JGI24006J15134_100140149	F021674	GGTGG	MERETYNTRLKTNPEEIPVGSLMRCKKHCRNNITIQKNGEYAILAPSIYRKGKAKYITHDALFPNGTRCIFMPVNWEVVSYAR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI24006J15134_10014014

Overview

Ecosystem & Geography

Associated Families

Sequences