Scaffold JGI24006J15134

Basic Information
Taxon OID	3300001450 Open in IMG/M
Scaffold ID	JGI24006J15134_10002566 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-53
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300001450 Open in IMG/M

Scaffold ID

JGI24006J15134_10002566 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-53

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9930
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (80.49%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

9930

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (80.49%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.5666	Long. (^o)	-138.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

49.5666

Long. (^o)

-138.6666

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F005547	Metagenome	397	Y
F018267	Metagenome	236	Y
F034211	Metagenome	175	N
F053549	Metagenome	141	Y
F064211	Metagenome	129	Y
F074152	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_1000256617	F018267	AGGA	MKVGDLISFKPKSFGDDDWSNPGIVLDSYVSDDRQGGGWRDEIWIVWIDGGKYMVNERNDDVAYLTPSLQKGA*
JGI24006J15134_1000256618	F053549	GAGG	MKIGDLVKWENVLNDSMDHHQEEHGIIIKMSRTGHETESAQVLLTDGETWWLDTQHLEVINESR*
JGI24006J15134_1000256633	F074152	GAG	MKLLTTFVLIGTVDSTDDFMATVEINMNPATEQVGYAVMPLTAFPCEIKEGDNFYILKLTKEAIPVIMCKDKDELEDIKSNDGG*
JGI24006J15134_1000256637	F064211	AGGAG	MMKAGQVKVWLDQGPAVLLQQCDVEGESIALDEVDDVVPTTEQGWIIHLLQTNELLTVHEETLHNGEMRV*
JGI24006J15134_100025665	F004771	GGAG	MSGNRIKKGDLVRMSTHDTGLVGIVVDRHPKAISTTRPQIGIMWIGGSGKVDWEPEPWLEVVSESR*
JGI24006J15134_100025666	F005547	N/A	MIVWVMQGSYEGELFSSVHMTEKGCALACISDITEFLGVDDEETAMSVCDHYAESDGEPEPIEWDQEKLKHMTREELWKIFADWSELSWDRMADRSFYLDANRVEIQG*
JGI24006J15134_100025668	F034211	AGGAG	MAYLKTDDLVIIPNKDGSNLQARVVDMQFRRFRRTWKDKATGENKSRWKSVPYAVCECFLGAPVGTEFVIPGYKLKNETKDGEKLLVLRDEYAAEFGGPWIEKMIEDSRAKRESAK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI24006J15134_10002566

Overview

Ecosystem & Geography

Associated Families

Sequences