Scaffold JGI24006J15134_10001976

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10001976
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11545
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (88.46%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017322	Metagenome	241	Y
F018814	Metagenome	233	Y
F026159	Metagenome	199	Y
F026408	Metagenome / Metatranscriptome	198	Y
F077384	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_1000197611	F077384	AGTAGG	MFQKGDFIVEYERSGRMGGIKFGVVMGAEKGFDDMLVLDVMFPNGRLYTFACHCQPYQEWLNEQL*
JGI24006J15134_1000197622	F026159	AGGA	MKKFTLIDIITMVGIASSILLVLMFASGCSMKFYKKSPEDVRKCCERVSLHQKEMDKFARYCKVALFLANSENTKEVGTGVRKGARDAVNVCKFVFDVTTDKDLLSAGDHQDYYKVRSYIYKDPRNNGGWNPPLCDPAEIHCEEF*
JGI24006J15134_1000197625	F018814	AGGA	MDATKSYIKIHGMTEGEAEDFEYDFDISSSDLLTELVPDLDNWGDLGWMELEEYEYHAQSQTMNLLLETKWTSPTEWLRNASMGSVYFENKLITMATIQKDETCVTGFAAMDGEVLQHKNIFEMESEEVGRYYDDEQPNYELDLLDNQIWDSIGQFLSVCTQFYQTESEDGNE*
JGI24006J15134_100019763	F017322	AGGAG	VSNKFNVKSWKQFQMLNEGITDVVYHYTNGLEKGAKILEQNKFLASGGFTKDVESELGKGKLYYFSTARTAANAYTGNYPQGVIFKLDGRALGQKYKGVPLDYWATSKRSSKKAANLDPGETEGFEAEDRILLDEPYIEDADRYIDEIHFAIPLYRFEKGMFDDKPTRRAGSSIEAYQMKGLKDGVAVAEQRNIPYYIHIDKQTWPQVEVGKKKALTKLSDFMEELEESGVTVNEPPGVSRPREEGALQEFGEDEIFLYVQAAQDILAGKEQFEGANVKGKIKYNDESKRKENGKVMFRNLTGSPNMQGRFYREIDNPLHNVSSNPKARPTLELLATLMRSTKQKTIKDFETYLNQVYKKNHPDGDSTGYRDS*
JGI24006J15134_100019767	F026408	AGGA	LNRRGMTLLVVLVMGALISLSAMLLFSTSNMEMMIAGNTSRINQAKISATSGLSHFIALELDYVTLRQQAGDLESIQAIPRTQLGDKTFYEVNVHFCCGLSAGQYIVESTGYYMKGDKIISSKSSRSLFISSQTN*