Scaffold JGI24006J15134_10000612

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10000612
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21831
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (30.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045198	Metagenome / Metatranscriptome	153	Y
F045797	Metagenome / Metatranscriptome	152	Y
F067212	Metagenome	126	Y
F068236	Metagenome / Metatranscriptome	125	Y
F091012	Metagenome	108	Y
F098234	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100006121	F067212	N/A	MQIHCKKCGKDVTMETEFETRRPYRIINNHKCEVKLAEARAKALEAGFIL*
JGI24006J15134_1000061212	F045198	N/A	MKLKAEHIEQIASYMADSLEDHLDGVFWDGVARVLDEFDIDYEDIGDISDEDCEAIVQETRLIFAPKNDSL*
JGI24006J15134_1000061214	F098234	N/A	MDKVQLENRVKELTVLIEESSNNVKNLVEEQNSFTKRLDDLNKPKLSPAKFDELQHIVESACEVFELEVNDCEYELELDYDNRIQINHFDWSRCQEDLTQHIMDRMESVFAVTEDEE*
JGI24006J15134_1000061216	F091012	N/A	MENLWKRLKPAVKKQILAEEEQYPYMVKEIKSHLEGNLFWNDLPVGAVKQVINFSHNSLLDASMNDFMWGEKFIKKA*
JGI24006J15134_100006124	F045797	N/A	MNILKTVKEDSSIYLETEFAGNKVYTKWRAYKIGELPKNFGCLEYETDVEGVNEWFNYKGYTYVRDNR*
JGI24006J15134_100006125	F068236	AGGA	MLETTGKNRKFTHDQVIEVAGEYLKCKETGQWVSERDVENYEVEMLNIEIQQYYEQEQDKYY*