Scaffold JGI24006J15134_10000256

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10000256
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36229
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (16.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015734	Metagenome / Metatranscriptome	252	Y
F019756	Metagenome / Metatranscriptome	228	Y
F037986	Metagenome / Metatranscriptome	167	N
F047377	Metagenome / Metatranscriptome	150	Y
F050011	Metagenome	146	N
F074154	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_1000025635	F074154	GGAG	MNFFQLQNKLFYSNKQKQPEPLDQEGEQSFVPFLFNRWLTMYSKETVCFVNETLNKYCGIFDTDKQKTYRLYFNLIPRLKFKRISYIKKPKKDKDKQDETDQLKMIAKNKNMSVRELEMYKIMLD*
JGI24006J15134_1000025636	F019756	N/A	MPQRSIDTLATQKHLIDLSTNNEGDVGLTDDFELTMIFDDILLVEYVDENDTGEIQRNGIFVPTNALTRAWRKAKVILAGPKAEYTKPGDIVIFPNNLGVTVANIDVNGSVVKKGIFLNEDRLFGICKIKNDNTKSSS*
JGI24006J15134_1000025637	F015734	N/A	MIIQRAALDSLLLNNVCEIRFVRRRPRAGDGPTRRMLCTKSYELLNSVNGRTTLNFAPPKGPMKVNEALENVLVVWDVIMQSYRTISMNSCDLIQQIPTNEFWEYFNENIYPMSPDQKYNFMNS*
JGI24006J15134_1000025638	F050011	N/A	MNVSLEKFSDCIKPYLLQTVAICTDRKIIRKGKLRIFQIKQHYAKLTLEDEVRTRIYEIPYPFDISTLGTKTILCYKLDKFLNVGDLQLQVKFLDSSKKSKIYNENLYIMPLDEVDL*
JGI24006J15134_1000025647	F047377	N/A	MSEKPNKNNEKDKIVKFIDAISGENYAAANKYLQSAVEDKLEARIRQAAEKPIF*
JGI24006J15134_1000025648	F037986	N/A	MNKELLPTELQDVLTEDSVESIEVALKEKVELSVEAALASQDELYAEKLETLITQIDKDHTTKMQSIVEAVDKNNAAKLGKVVKKYETELNDGASQFKETLVESISNYLEEYIDEAVPVAAIEEATRNSTAMAVLNNLRSTLAVDSSLMAESVKTAIVEGKTEMDNLKAEIAKLKKTNETLNENYNQAKSAAFLENRCAKFSNKKSTYLKKVLSDKSPRFIEENFEYTARLFDRKEKEQLEVIREEAISNRTVKADAPKTVVQERAKPSVPSNPYLEGLELMK*