Scaffold JGI24006J15134_10000143

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10000143
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 57887
• Total Scaffold Genes: 118
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 107 (90.68%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F026439	Metagenome	198	Y
F077952	Metagenome	117	Y
F106118	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_1000014344	F004771	AGG	MARIKKGDLVRMGTGTHVGIVVGRHPKAISARKPQIGIIWIGGSGKVDWEPEPWLEVISESR*
JGI24006J15134_1000014354	F106118	AGGAG	MQVGDLVRCMTIDNKPVGLVVGRFNPAHNPLDAVAFGSRPDIFYVMIPGYEDSFPIRTRQMELVNASR*
JGI24006J15134_1000014366	F026439	AGGAG	MASQLDTVMTFDQAEAQFEECILPLFQESEQRMGHADTVARSEAWSNFADALHTNEEISDWQVCNWEHPDCCND*
JGI24006J15134_1000014370	F077952	AGGAG	MKFYVSRTHVSLDSGKPVGYETVLTKPDAAKPTREMLRRMRALGIPDLHMCEHPAGSRRWGKLDREQTKRTKTRAMTMADVAADLAELEKEAAEKEASNA*