NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold yes_1031243

Scaffold yes_1031243


Overview

Basic Information
Taxon OID3300001375 Open in IMG/M
Scaffold IDyes_1031243 Open in IMG/M
Source Dataset NameGoat rumen bacterial communities from Langston, Oklahoma, USA - assemble1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCornell University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)541
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Goat Rumen → Goat Rumen Microbial Communities From Langston University, Oklahoma, Usa

Source Dataset Sampling Location
Location NameLangston, Oklahoma, USA
CoordinatesLat. (o)35.453976Long. (o)-97.515884Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063201Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
yes_10312431F063201N/AIRDLVRSRGLGDVYKRQDIRYLDDENEESPENIPIDKVDCSGNNPKCVLENMVCENDTMKINCTCKEGYYPNFNNETDKNYCEIEQKKQLTAFLLELFVGFGAGHFYRHHYLMASLKLVAFFIGIYLICLFPLTAKCVTDQCDNDCVVIVVSIFFYLYALGLAFWYIWDLVYFGKNKYQD

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