3300001375: Goat rumen bacterial communities from Langston, Oklahoma, USA - assemble1

Overview

Basic Information

• IMG/M Taxon OID: 3300001375
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0090745 | Gp0055791 | Ga0012446
• Sample Name: Goat rumen bacterial communities from Langston, Oklahoma, USA - assemble1
• Sequencing Status: Permanent Draft
• Sequencing Center: Cornell University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 64563911
• Sequencing Scaffolds: 20
• Novel Protein Genes: 23
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella copri	1
Not Available	14
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia	3
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Goat Rumen Microbial Communities From Langston University, Oklahoma, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Goat Rumen → Goat Rumen Microbial Communities From Langston University, Oklahoma, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: Langston, Oklahoma, USA
• Coordinates
  • Lat. (^o): 35.453976
  • Long. (^o): -97.515884
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008732	Metagenome / Metatranscriptome	329	Y
F012838	Metagenome / Metatranscriptome	277	Y
F014928	Metagenome / Metatranscriptome	259	Y
F015040	Metagenome / Metatranscriptome	258	Y
F017076	Metagenome / Metatranscriptome	243	Y
F020283	Metagenome / Metatranscriptome	225	Y
F028974	Metagenome / Metatranscriptome	190	Y
F029939	Metagenome / Metatranscriptome	187	Y
F035559	Metagenome / Metatranscriptome	172	N
F041506	Metagenome / Metatranscriptome	160	Y
F045443	Metagenome / Metatranscriptome	153	Y
F046723	Metagenome / Metatranscriptome	151	Y
F050781	Metagenome / Metatranscriptome	145	N
F053657	Metagenome / Metatranscriptome	141	Y
F063201	Metagenome / Metatranscriptome	130	N
F064238	Metagenome / Metatranscriptome	129	N
F067245	Metagenome / Metatranscriptome	126	Y
F071792	Metagenome / Metatranscriptome	122	N
F083432	Metagenome / Metatranscriptome	113	N
F089572	Metagenome / Metatranscriptome	109	N
F091047	Metagenome / Metatranscriptome	108	N
F100052	Metagenome / Metatranscriptome	103	N
F106172	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
yes_1001704	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella copri	1915
yes_1005362	Not Available	1234
yes_1006177	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	1169
yes_1011680	Not Available	884
yes_1014284	Not Available	805
yes_1015774	Not Available	767
yes_1016346	Not Available	754
yes_1019833	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia	686
yes_1021132	Not Available	665
yes_1021145	Not Available	665
yes_1021619	Not Available	657
yes_1026651	Not Available	589
yes_1027895	Not Available	575
yes_1027943	Not Available	574
yes_1029427	Not Available	559
yes_1030897	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia	545
yes_1031243	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	541
yes_1032729	Not Available	527
yes_1033867	Not Available	517
yes_1035612	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
yes_1001704	yes_10017042	F041506	MCKTYTLEDGESLMAELKSTRGMMAEMRGRLERDEITPDEWREWYAGYQARLDEIKEAVSGMREEVSRRNADLERQKRERAAELNMSLEEYENYLKSLIIS*
yes_1005362	yes_10053622	F050781	LKPIYDQILEGMKNPERLIKEHSLQALSYLQYKYKKTLLDFYLIEENRKFIGQSCKTDKAYIKEADFGNGNKIVEDSGKGIRQAALDIETFMIVNYPNKIIFEEIVPLMIECLLDTEDYLQQIVYNNLIKLAKLKPTAFLPYGGKLIDTLFPVFR
yes_1006177	yes_10061772	F053657	VFHFLYEGQYANKLFSHPTTYEENPILKNLVDNSYVPDKPKNEKTCDEVFYEYLHIFQSKTNKKYFSLLLKFVLLFRECYDISKTKDSKDEVKKAVTDTISPEGLPDLCNEFYGEFMEPNNFFGIDEPDEKNEIIEI
yes_1011680	yes_10116801	F045443	AESYDINPIYFRTNQTRKVFPKFSFTKENIPLGNSISLCMAAHWGEIERGKNYEIMKPVKGLPQCSSVNEKFIWNEDDSIYGIDIPAWKQFMYEVDCNYEDCEEYCKDKYGGAYVKGVNKNVCYSYEILQGICVVIKYDPLKDDYVFHGGCYPENNTYRMVPGILGEEVTFNNVKIEIRELSDPIVQVGEWTDYGYNLGHYWRYVSFVLKFLLLAALGLLGYVCYDIYITREKFKGAPNLIGGEEDRGMPGGLGM*
yes_1014210	yes_10142101	F106172	KKKKKSSKDNSNFDYLFRHFITSETPEDQLDTILDLFLNKLDFNFQNQNNENVTPLMYLVGEGLNSLCEQVIHKIGEKLELSKKDDKQENIFFKIINSSNDNGKVNLFKTALSSIKEISEEEEKKEALDSINSSGKSLIECALNVGNSDISSMLLMEGIQPNIKNSITGDNLLHFAIRGKNPFCLKMVLNTVDQELIYELIKETNKDNETPLQLAKKLNIVTMVKQINDFISGEKKSKISGENNEDEIYGMLAQLDEENTEKIVNSIK
yes_1014284	yes_10142841	F064238	MEDNLITLQDNKKRFLLRKPIRIITLFLLYAVIMAEAMVANTFTSTNANIRASLRITEKTHAIFTFIYHVGQFLSAICIIVIMRNPQRKGTVLYSVFTTFAAVMFFQFTDNQMIIMTIYFFTGFCVMVMNVYISLWIDQLAIFSFKTIFLALTNVCRSSGICCGILLNYYFGADNFTKSFLVEGILLGIIGFAVIQIPSVYFNGYLLLSKGKLGEQKFNMNRNKKEEEDSKSLDKEDSVYRFRHSGISTKDEYIIWIIYSFSK
yes_1015774	yes_10157741	F083432	EKNTKKVISKLDFDMFITSLQELSLRIYPSLKKNQAFEKLMHEQINISSLEINSDYDKVIELYNEIIQKEENENDFSEILNEFKPIFKEIFDNYKDLHKDTISWQNYLIFCKDFNIISNNLNITDSNTIFNGLSKKYTQEKGIVDTGLIDFNYFFYSIAIFALQANNGEENENNLISLFLAMQPSPGIQNPRNNGKGMYITYQNRFREKLRELKKIYPTYFNNGEPDEVKVTSFNKIFSM
yes_1016346	yes_10163461	F089572	DKIGNLISGTFFESEIHMKILKHQNSNEFKKIDWIFYLENNEIFKIKVKLYKITYDNSTVIDLKITYVPKLGQNNLDQLIPEINNVQIFHDIETAIEKQYNAIFQYECCLIQGKPEEIWDILSDNSKLVLIAPNNECFLPININNIKVGQIVDVKMNINDKESIIKVKLDLLRKKIGNKWIFCYTILGGKPYDILKQSLMCQLTKVNNNETQLSIFTKIYENINGDMIVYLSNKKKYVLSSLKDFFINF*
yes_1019833	yes_10198331	F046723	IQHQIEVLAKGISRLRPNDPFLKEIDDFILTIDRIPKMSQLVLNRTLCQVARDELKKYSRNESTYTPYLTGNQLKGIVPGGFLEQNAGLIADSGADEAETVVPKLLLNKMDTERKGRKLLCTPEYTQVGIANTEFEGENYYVIILANNDAEETGEPELPNVDLTDLKKAFDLYDHDGSQKIRIKECLDGMRSVNFDKTNPILFDIICDLKDNEWCSWPKFAYHVHSCI
yes_1021132	yes_10211321	F015040	YQTQVPSSYVEDYKNLEGKVTISHDEGNEKYFNNISKYFRLQRQIFQKLNHGLKGFYNSLTSACESLQEVHKYFEIMHVLNTRVLMKQTITKSFEELAFFFDNWKKVLIKQKELVKTHMKDFYKYVKLEGIAYEELIDRRAELKNKYTAEVARITAKKEKLFATGDISKFELGDDRNIDKDRLTKDKPYAFEKMCKSDNLALEKLYNQLGYANKMNMLELK
yes_1021145	yes_10211451	F029939	SKSPAKENQETKEVQEIRESEYIKIPSPEVDPITKPVPIDFPRATIPFRTSNAYQLFSEEKILYNVYFENKENQIKIFIHERDSNPKNIYEKTFSLEDLIQTNDWFKIFDNIKDLLSELELLIKNDNLGIKLKKEGELSLYIILPNKLMAPVEIVLPQNGLKEKKLFKEIYLSLLNIEQKHRQEMKRISEKLINLEHAVGLSVNQSQHDKYSIKAKENIEE
yes_1021619	yes_10216192	F067245	YIFSSGHNTTSTIYNLSKYPLPKNSEIKLFFEEVSWVRSGITFSKEIANDQTDSNCPLFDVYCILEDLIQFYTLKSGWKNCFRNDNHSLKNGDNVTITLKNGELRYAVNDEDLGGFIKVDLCDKKEMYLLVHTRNEKSKCQILYISEIFN*
yes_1026651	yes_10266511	F012838	LYFTQCFNDSQRNGQITFDQFSFICSEYKKFDQAVLQETLKDLKTNLDKKNNNAQIILKQDEYFNYVNTVLKDQAQSKNQNDPEMEKLFKSLAGKEGDYVYKKKLSDIIRTFDLPINLDQFFQPIGGQEEINFNEFCSLFQVEKVDENLRKTFINFIDKSSKEPDEKEDIKAIYKANFPIKYYGN*
yes_1027895	yes_10278951	F100052	SKEETQALLERILDKIASRFVKKYLPPLENVLEETQFFIPVEFYECKNKLPVPEHKVVVIFKVNRNLNKDGVFFQIENESVSYPLFKSINLSYFESIIDRVLLDKYKTSQALHLQSNFESTRILNLNGETKKLYTILDEENIFLNNKSDYYRYDGVDLNFKIPSIDDILRLVKVMWKTLVANNLCLLYTSP
yes_1027943	yes_10279431	F035559	SNFFKILTKYDLNKILQNQTIIDTAEMSGQALFNYEVQVTNLWVTYFKNPENVTIDQETTSDGLPQVKVTLTNVEVAIEIEHLYVKYGLISDNFYNADGDIKFSLIEGRYHFSTDGKLVLSEFNVEVEDLTIDVRKDFLNWLIGLFKGLIKSKVTDKLEELGATLQTKVNEIIENEFTVDIGHGITLNLTN
yes_1028029	yes_10280291	F014928	IHKEIQPVINTQIQPVITTEVQQIINKQIQPVIHKEIQPVITQDIQPVITTEIQPIIQREITPVVHKQIQKIIHQEIQPVIIKRVQQIIHQEITPVIHKEIQPIIHQDITPVITNEIQPIIQKEIVPVIHKEIQPIINQKIQPVITKEIQPIINQKIQPVIHREIQPIVHENIQQIITKEIQPIINQKIQP
yes_1028387	yes_10283871	F071792	FEICLKYNEAKKSFFISYIDFYKIAADLRPDEYKKVRDWTKILKPEDVEDVREIELFDIPVDFTNNKCKVCKKEIGKDEPMYYCYKCAAKDKYCHDCVIKHYRNKDNIGKKKFIDPEHNLLFFKTRNENSFKQIDKFKLGTDLFKQYDDEKQFENFQRLCYGCKRKFNESPRYICLNCNKGTLIYGRYH
yes_1029427	yes_10294271	F017076	MFRPRTLCQMKPAPSDPSIINPHKTSLPPDYFQKFPEYMGNPKEFPSKTKKPLQITTKGYLVQKIDKKYIEDIQPKEQMIDFNKLLLQFKSPEEIQSLQVKDLLDIDSEMLEDLKKKCQDFTNAASNLSEEKERSGQIEEAKSDQQFMQYLMDQYVKMQDNNMNLDICLLYTS
yes_1030897	yes_10308971	F008732	LITKVMESTKYQRAMTEGGEETAKNPEQRKTFFKTHQDKGFAYFNNTRVGSCSYVLVKNGQCLAVPFYIINRRGRSLNHFKTVPEKSPITKSTYMNDYITFGDIHCGMDKKPLMPYSMESPRSRLPINGIISGAAINRASIELGDYRLINRKQWKSTYKDFFRKPSIVPVSNYGIASDMA
yes_1031243	yes_10312431	F063201	IRDLVRSRGLGDVYKRQDIRYLDDENEESPENIPIDKVDCSGNNPKCVLENMVCENDTMKINCTCKEGYYPNFNNETDKNYCEIEQKKQLTAFLLELFVGFGAGHFYRHHYLMASLKLVAFFIGIYLICLFPLTAKCVTDQCDNDCVVIVVSIFFYLYALGLAFWYIWDLVYFGKNKYQD
yes_1032729	yes_10327291	F020283	KMMNKIKNIAARHSSKVKYLFLIGAIIAAINTLSRADYNFVVYLYMFYVWTFMADSAEAQRQDKIGTFYILIYSLLIDFIWCVFWGGKWDQVPTLFHEMTLFFSWLGIIWKLFVILFVGILELDIIKASIVSILNKNNKYVKYDDEQDPGI*
yes_1033867	yes_10338671	F091047	MQPTRTKKEWEEEFKKIYICILKRLKSYDDLILENEENLNAFKSEHTLDNNSIEFLPAYFNFIECFLAQDKKKLSEVKKYLIVGLTNLLNASKKGDDKGTAYHGGNEYDDQEEVNRKLLQSRLDLLFGRFNLKSDAPPEQTIDKLTSSIITYSE
yes_1035612	yes_10356121	F028974	YTKQYIFTGTTKGDISILDLGLPGKEKLIKEISYFGGNLEIRIIRFNALDREIYTGDQKGKITVWSLKSGQSIYAWQAHSGAITQMQYFPKTRQLLSMAKDKKIIYWQLPNDWVKDNLKKFQEENIREINNARAIEKFKKQKEKGDDDSSDDSLDGWDIPGK*