Scaffold JGI20159J14440_10001019

Overview

Basic Information

• Taxon OID: 3300001353
• Scaffold ID: JGI20159J14440_10001019
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_09
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20542
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (60.98%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021268	Metagenome / Metatranscriptome	219	N
F097370	Metagenome / Metatranscriptome	104	Y
F100469	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20159J14440_1000101918	F021268	AGGA	MTYLIHQFHLGNEASDHLNSVGWDGDFGDFPEIRIHRDVKFSGSEHYESWMEEHFTSVARVSGVDTLEDVFHVGNGYGPDGSCIQKFTRMHSVSVGDIIVNEKCGTAWMVESEGWSNIDFGKAF*
JGI20159J14440_1000101924	F097370	GGAGG	MVVNPQVNVAGKTSDELLEILHELCKSHDWFWTMADDSNAYHNGLANADEINYVRNVLDAMGFGMTADTIINDYKPNVKIKH*
JGI20159J14440_1000101925	F100469	N/A	MLKLNTKEFIVSELTRNPKAYLNGSYVNFERMGKRCTGFVEEVFDDGFAVATVVHNDAGFPHHNTDYVVFVKTENAFR*