Scaffold JGI20157J14317_10057603

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI20157J14317_10057603

Scaffold JGI20157J14317_10057603

Overview

Basic Information
Taxon OID	3300001352 Open in IMG/M
Scaffold ID	JGI20157J14317_10057603 Open in IMG/M
Source Dataset Name	Pelagic Microbial community sample from North Sea - COGITO 998_met_07
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1721
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Helgoland, sampling site Kabeltonne
Coordinates	Lat. (^o)	54.184167	Long. (^o)	7.9	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005012	Metagenome / Metatranscriptome	415	Y
F088272	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20157J14317_100576033	F005012	AGG	VNFEVIKTILISLLLFPSIVFANDFELLCKGEEAKYLEEDPNSKEVTTKVIGIQLYEEGMRLDGEWFDNKSDLTEDYSLERSYVKSKDNITGVRNFSTNALIEGRVIHTSKIDKVEINILTNDIFWTHEFNRGDKTNNEAKTIYAFRKNFQGKCK*
JGI20157J14317_100576034	F088272	N/A	GIFMAVILLATSYLWINSTGYWFVAHAIEISGKNLLIISFFIGFLSTTKSISEPNTNS*

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