NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20157J14317_10000629

Scaffold JGI20157J14317_10000629


Overview

Basic Information
Taxon OID3300001352 Open in IMG/M
Scaffold IDJGI20157J14317_10000629 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_07
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35730
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (76.47%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005350Metagenome / Metatranscriptome403Y
F007687Metagenome / Metatranscriptome346Y
F025260Metagenome / Metatranscriptome202N
F092058Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
JGI20157J14317_100006291F092058N/ARCHNMTLAKRIAAKRADQQRGFSDVEEWGEADNPLRLYFTQVSARDIEKVQRKYPNFLAEPSMSAMVEMIIVKSEDEAGEKAFTLEDKAILLGEPVNVIAKVFGSIFDTDSPEDHLKN*
JGI20157J14317_1000062925F005350GGAMINKIDCPECEGDGTVEREVWVRQSATWHGDFESEIQDCDNCDGKGKIEPMEEDE*
JGI20157J14317_1000062933F007687GAGMSSKNKPKAKAAMANRGTFDSKHTDHAKPIHYKVAAAVEPFTFASAAASKVWGDTLVDCVPPAYALRYRELRGDLEAAMVAEDHARCVELATSLIKALKMMNIKARQDGHEPPKVDGHICQWGEKIYCLLASGDISAVRRANPSWVVYAISDVCAVLNALTDDLVAPVVNEFPKAKITAVRLYDDEINFEPNGE*
JGI20157J14317_1000062946F025260N/AMLTWGGSKAAPSNGGSKMKYIILKSCVASGASRNAGEIIELSADEAASLTSYGRIAPAPEPKPTAAPKDRAAAPKSTRSKK*
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