Scaffold JGI20153J14318_10035716

Overview

Basic Information

• Taxon OID: 3300001351
• Scaffold ID: JGI20153J14318_10035716
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_03
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2050
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006870	Metagenome / Metatranscriptome	363	Y
F007087	Metagenome / Metatranscriptome	358	N
F093220	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20153J14318_100357161	F093220	N/A	KIDRMQENLNIIDKNVRVLEKIINTAENNLTAEINNVCNVN*
JGI20153J14318_100357165	F007087	AGG	MKKLLLIALTIPNFVLADEFKLICEGEESKYRNDVLENTSKISLKLQVRDDSILIDSMTYKSKTFDYGAVKGSSKYVKEDAQIVLETTQVSNDCDTSLLNVKLNRTSGXIETISKRIGTCDGSSFTATTKFKGKCK*
JGI20153J14318_100357166	F006870	N/A	MKKINLFFLLLLSFATPTQASSLETKLSPQGADEYNFFITGDADSSEKKLRDVFQNKVNEVCGTRFEIISIKVDHISTEGVKKYILNGTFKCFVNSQM*