Scaffold JGI20160J14292_10007097

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI20160J14292_10007097

Scaffold JGI20160J14292_10007097

Overview

Basic Information
Taxon OID	3300001349 Open in IMG/M
Scaffold ID	JGI20160J14292_10007097 Open in IMG/M
Source Dataset Name	Pelagic Microbial community sample from North Sea - COGITO 998_met_10
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7774
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (36.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Helgoland, sampling site Kabeltonne
Coordinates	Lat. (^o)	54.184167	Long. (^o)	7.9	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F084252	Metagenome / Metatranscriptome	112	Y
F098052	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20160J14292_100070973	F098052	N/A	MDKVKGIFRFKYTELVNNNEITNEMVIETKDVVRSIGRFGTSRQLTDLEVKQLNKY*
JGI20160J14292_100070976	F084252	GGA	MSKPSIKCSRCGKIFNGGFDYRMHFDKHLDEWYESEDKHEYIKRTTQ*

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