Scaffold JGI20160J14292_10003326

Overview

Basic Information

• Taxon OID: 3300001349
• Scaffold ID: JGI20160J14292_10003326
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12342
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (17.39%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024089	Metagenome / Metatranscriptome	207	Y
F035765	Metagenome	171	Y
F099289	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20160J14292_1000332618	F035765	N/A	VAKKHNANTLFRGHSTINGLIKDLLAYFQSASWTDADEALKQQIFADIVEPNKCWYCGVGEFRDMDHFVPTNGRLFDPPMFGLEHDGNLIPSCKTCNANKSNKHPLEWLKRGRVTKGKEFVFSAERIEVFQTFFDTFRDKLIADIELTDIIVNQAIPKCEASTKELANFEEWLNI*
JGI20160J14292_100033264	F099289	N/A	MITIEDANXEKFYINPVNVVYVKQREKFWKILLTTGEAVMTRNVDGAMAIVNAIKRY*
JGI20160J14292_100033266	F024089	AGAAG	MNKLEEAIGNLNNIQDNIDALIYAIGDSPQQYTEDELLNMLMGMSQLHQTWYDKLWVEYENFRREYNAFDEDDIFDQNFLASKKKLDKTKKK*