Scaffold JGI20160J14292_10000216

Overview

Basic Information

• Taxon OID: 3300001349
• Scaffold ID: JGI20160J14292_10000216
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54737
• Total Scaffold Genes: 85
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (17.65%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005706	Metagenome / Metatranscriptome	392	N
F020903	Metagenome / Metatranscriptome	221	N
F029278	Metagenome / Metatranscriptome	189	N
F038672	Metagenome	165	N
F056150	Metagenome	138	N
F080238	Metagenome / Metatranscriptome	115	Y
F081203	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20160J14292_1000021613	F005706	N/A	MKESRVLKALGLSSLDVQNMLMNGMTMPEIAKKYKITYISLVQAFEIQKKDFKYIDYKQPKKEVEDIKTVSSTSERLYTEESLNENELLAFYKYEQKNKAYFEIN*
JGI20160J14292_1000021633	F080238	N/A	MEEKLTEFEKMLKELENKTVPERTCNIDDENCESCSG*
JGI20160J14292_1000021655	F081203	GGAGG	MDKYEFYYRQKQEWDYWQANQRHNFLSDRLLGIIDQVQWNKNILKRTKLSDNDLEIHQNRFSNLITEVVKISIELKELAINYNPKRIKQLIIILTKIKNYNNEPIENS*
JGI20160J14292_1000021663	F038672	N/A	MDELDIMLRKNKLDIMIIKASAEVEKTNNKVKQEGLEVLMDILELIHDLQHEIRQNYKDIAKLKYENAVAYKENAILKADFSTYKHNLKKAELESDKNG*
JGI20160J14292_1000021667	F056150	N/A	MDKKLIKKIENFIFWIGREYNVVELEDFKQDIFMILLNKGEDFIIQLDKENSIKKYVYKLCLYQIISERGQYRTKYYLPSQFSSIEDIETYSNSCFKDEVLKDLIDSLDGLDKIMMEQLLICSGNRNCLAEKSDIHRNTIQYKFKELANKIKQKWTLNEFYS*
JGI20160J14292_1000021676	F029278	N/A	MEITIPTKWEDVTIGNYINLRPVLNSKLNPIERVVNILAVLTGQKRDVIKNISLKQYKSIKKKMSFLETELPKQLKDKRFKIGGQWYEFKVDAKKLLFGEYINSMEILQNAKDDEEAIFNNLHHILTTICRPVKKTVFGWKHIEVDSEVLRKTADNFLNNMPMTIAYPIGVFFYTHSEDLTKAIKTCLMQEAEKMTKEAREELDLVNVGGGGTP*
JGI20160J14292_1000021677	F020903	N/A	MADQLDIFGFDVDQLEEVKIDNPTTLSQVFNNIAADMVYCLQQSVQKEGLVYKGSLQKSIRMPVKMFGFRMVATLYLADYYDYLNQGVKGIGGVRKSGDKKGQPWVIKAPNSPYQFKKGPSVSHVRQWAKSKGLNEYAVRNSIARTGIRPRYFFDNCMQETFYGEAFNKFKTDIRIVSGERVAKGLKEILKK*