Scaffold JGI20156J14371_10002958

Overview

Basic Information

• Taxon OID: 3300001347
• Scaffold ID: JGI20156J14371_10002958
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_06
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12971
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (22.58%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033809	Metagenome / Metatranscriptome	176	N
F042800	Metagenome	157	Y
F068853	Metagenome	124	Y
F073265	Metagenome	120	Y
F085723	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20156J14371_1000295815	F085723	N/A	MITKIKFNLLHPTLNAMQQQAAYQLSEIEGWDVEGKKAFKDGLTIHLHENGNALCKPSRRLHGFN*
JGI20156J14371_1000295816	F073265	N/A	MTKTQAYIRASKFYLSEELPPDFDELDEQDVTNFIQDNAWQPFEQWEPHGIWELIEDLANEFIELSNLNH*
JGI20156J14371_1000295817	F042800	N/A	MNKVTLHAYKSTPFGLERVNDHPLTIAEAKAMLRANPSLTVRDAQSASYEVLHDWQDEEPTEQELAVARNFSAGIIIAVAASIALFIAEILTR*
JGI20156J14371_1000295819	F068853	N/A	MSLRTYNKSQLAILKAVKDELKYYLGEEINHDPEGDAAALAELETRLADWLTVGGGGAWIRSLPEVQEELTK*
JGI20156J14371_1000295830	F033809	GAGG	MSEELAIETKNFITKKLRDAQEATGHGRAWCKREPKKWALVAQHIIQKPNEVNTFLRKNNIKRNFYYDVQTELLADPESSEIRNAWASEISSVLFQGLDTYRKSQNSYSDRVESGDIEIDGNELFKQGKSLQAFNDIHSKLTGNNIQRHVVEHRTTLDEAEEYARKMLEDLPEAEIVD*