Scaffold JGI20156J14371_10002167

Overview

Basic Information

• Taxon OID: 3300001347
• Scaffold ID: JGI20156J14371_10002167
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_06
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15721
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (32.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012575	Metagenome	279	Y
F054775	Metagenome	139	Y
F055560	Metagenome / Metatranscriptome	138	Y
F066795	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20156J14371_100021673	F054775	N/A	MNQDKFNSLIDSLVESVKDYNLDSSFDYYDAILEICSNCDHSFVYYKAWQLVNFVKFEHGSYDDNLFDEVEEEVQENDHNTDDITLNDYMMTYAFNILKVATLKKYEALKLEVA*
JGI20156J14371_100021675	F055560	N/A	MKNNQENTDIKVMFDSLKPTKKEQAIVWLLSPVIVLATWAILIFICSL*
JGI20156J14371_100021676	F066795	N/A	MNLTKTFPKMSSNDWRKLQLSTDAKNQRDWASRQLHDMENDPDNFTLRDYLKVKAGYNTAVETLKELQ*
JGI20156J14371_100021677	F012575	N/A	VSVTEYIDETAFVYRVVSDYKEVYIEWHLKGLPHLFTGRASSHEEKIEQYKSVLKELKKMSSSATNQQS*