Scaffold JGI20151J14362

Basic Information
Taxon OID	3300001346 Open in IMG/M
Scaffold ID	JGI20151J14362_10038219 Open in IMG/M
Source Dataset Name	Pelagic Microbial community sample from North Sea - COGITO 998_met_01
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300001346 Open in IMG/M

Scaffold ID

JGI20151J14362_10038219 Open in IMG/M

Source Dataset Name

Pelagic Microbial community sample from North Sea - COGITO 998_met_01

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2232
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

2232

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Helgoland, sampling site Kabeltonne
Coordinates	Lat. (^o)	54.184167	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Helgoland, sampling site Kabeltonne

Coordinates

Lat. (^o)

54.184167

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027054	Metagenome / Metatranscriptome	196	N
F032856	Metagenome / Metatranscriptome	179	N
F034391	Metagenome / Metatranscriptome	175	N
F049006	Metagenome / Metatranscriptome	147	N
F093905	Metagenome / Metatranscriptome	106	N
F100982	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20151J14362_100382191	F100982	N/A	DKLEQIVDSIACSNIDTDTFKCLNENQRSYLRNEIVRTLDTMLNLD*
JGI20151J14362_100382192	F093905	N/A	MKHISKKEFNDFYTIMKNNSDKSVLEVYNLYKSLRANNLMPKELINNKIK*
JGI20151J14362_100382193	F049006	N/A	MTKLEFIDVCTRHGVDQWIVMDDLLLNGKQHPHDLTINDLNEFMWSTY*
JGI20151J14362_100382196	F027054	N/A	MTKQKKETSRHWTVELNIGSKRNMGKLRHSKSSGYRYAYHDLNHVRKKVENRFDGGSGNIIKAMFEFDGTYNDEIEKSFYIAFSFYGNIETFKEDDGLEGEYMAYEDLKKLEDKLTILCMELEQECIGYNIKEWTSSTFYPTGKQDLIYHPNYEGEQMIFEDEYFMTFGYHKLSSFEKLHTV*
JGI20151J14362_100382198	F034391	N/A	MTKYAKQYDNKLLEGILDHMANELKSEFGFSTLDEEDTLDVISLFVDNPDKYEQAYLHSIETXDTEVISSRKKSNVEILQDLSNYTRYDG*
JGI20151J14362_100382199	F032856	N/A	MDEAKYRYWAKEYSDHLIEDVSDELVDEYETDNPTNEANANDEFVVEEDYVMQLIEYWIDNYTMGNHKCKEIVDNLDYDIFEIDMEFGTRPDSWKQAGVWALDHAIHTDDNI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI20151J14362_10038219

Overview

Ecosystem & Geography

Associated Families

Sequences