NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold A2665W6_110392

Scaffold A2665W6_110392


Overview

Basic Information
Taxon OID3300001322 Open in IMG/M
Scaffold IDA2665W6_110392 Open in IMG/M
Source Dataset NamePermafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A26-65cm)- 6 month illumina
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1135
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)

Source Dataset Sampling Location
Location NameAxel Heiberg Island, Nunavut, Canada
CoordinatesLat. (o)79.26Long. (o)-90.46Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046558Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
A2665W6_1103922F046558N/ATNTTRESLSLERLGDTVHFTAAVDTFSTTTQGTIGPTQFVQLPVQLSGTLMGDSLIVETDSVAEKCSSVSSALLADLHNLLIRFPTPVSQGSGWRNSVELKACQGMIPTTSRITRSYIVSGEIAYQGDLVLVVQRTDSIQAHGEGAQQQHPLTLDAKGTGNAVYYVSPRDGRIVRLNTEQDLDLAITVSGKIHRFKQTSKQDFVAVR*

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